Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HPE48_RS06375 Genome accession   NZ_CP054368
Coordinates   1243327..1243956 (-) Length   209 a.a.
NCBI ID   WP_000793792.1    Uniprot ID   A0A3T8SP29
Organism   Escherichia coli strain SCU-115     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1238327..1248956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE48_RS06360 (HPE48_06345) helD 1238569..1240623 (-) 2055 WP_001385262.1 DNA helicase IV -
  HPE48_RS06365 (HPE48_06350) yccF 1240746..1241192 (+) 447 WP_033546325.1 YccF domain-containing protein -
  HPE48_RS06370 (HPE48_06355) yccS 1241202..1243364 (+) 2163 WP_122996508.1 YccS family putative transporter -
  HPE48_RS06375 (HPE48_06360) sxy/tfoX 1243327..1243956 (-) 630 WP_000793792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HPE48_RS06380 (HPE48_06365) sulA 1244175..1244684 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  HPE48_RS06385 (HPE48_06370) ompA 1245040..1246092 (+) 1053 WP_001346420.1 porin OmpA -
  HPE48_RS06390 (HPE48_06375) matP 1246168..1246620 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HPE48_RS06395 (HPE48_06380) ycbZ 1246806..1248566 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24174.04 Da        Isoelectric Point: 9.2180

>NTDB_id=452056 HPE48_RS06375 WP_000793792.1 1243327..1243956(-) (sxy/tfoX) [Escherichia coli strain SCU-115]
MKNLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=452056 HPE48_RS06375 WP_000793792.1 1243327..1243956(-) (sxy/tfoX) [Escherichia coli strain SCU-115]
ATGAAAAACCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGTATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3T8SP29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995