Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMTA208_RS15200 Genome accession   NC_017188
Coordinates   2993672..2994316 (-) Length   214 a.a.
NCBI ID   WP_014470899.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2988672..2999316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS15165 (BAMTA208_15710) - 2989857..2990288 (+) 432 WP_013353387.1 Na(+)/H(+) antiporter subunit B -
  BAMTA208_RS15170 (BAMTA208_15715) - 2990288..2990629 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  BAMTA208_RS15175 (BAMTA208_15720) - 2990622..2992103 (+) 1482 WP_013353389.1 Na+/H+ antiporter subunit D -
  BAMTA208_RS15180 (BAMTA208_15725) - 2992109..2992585 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  BAMTA208_RS15185 (BAMTA208_15730) - 2992585..2992869 (+) 285 WP_013353391.1 Na(+)/H(+) antiporter subunit F1 -
  BAMTA208_RS15190 (BAMTA208_15735) mnhG 2992853..2993227 (+) 375 WP_013353392.1 monovalent cation/H(+) antiporter subunit G -
  BAMTA208_RS15195 (BAMTA208_15740) - 2993267..2993650 (-) 384 WP_013353393.1 hotdog fold thioesterase -
  BAMTA208_RS15200 (BAMTA208_15745) comA 2993672..2994316 (-) 645 WP_014470899.1 response regulator transcription factor Regulator
  BAMTA208_RS15205 - 2994397..2996703 (-) 2307 Protein_3033 sensor histidine kinase -
  BAMTA208_RS15210 (BAMTA208_15760) comX 2996726..2996902 (-) 177 WP_013353396.1 competence pheromone ComX -
  BAMTA208_RS15215 (BAMTA208_15765) - 2996921..2997796 (-) 876 WP_013353397.1 polyprenyl synthetase family protein -
  BAMTA208_RS15220 (BAMTA208_15770) degQ 2997948..2998088 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  BAMTA208_RS15225 (BAMTA208_15775) - 2998553..2998894 (+) 342 WP_013353399.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24266.65 Da        Isoelectric Point: 4.9953

>NTDB_id=45200 BAMTA208_RS15200 WP_014470899.1 2993672..2994316(-) (comA) [Bacillus amyloliquefaciens TA208]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKNESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=45200 BAMTA208_RS15200 WP_014470899.1 2993672..2994316(-) (comA) [Bacillus amyloliquefaciens TA208]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGTTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGTCTGCACGGTGCCATCAGCAAAAA
CGAGTCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACAGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.514

100

0.855

Multiple sequence alignment