Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SDSE_RS13420 Genome accession   NC_019042
Coordinates   540596..541405 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 535596..546405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS13395 (S_dysgal_equisimilis_AC2713_604) - 535969..536670 (-) 702 WP_015057398.1 amino acid ABC transporter permease -
  SDSE_RS13400 (S_dysgal_equisimilis_AC2713_605) - 536684..537484 (-) 801 WP_015057399.1 transporter substrate-binding domain-containing protein -
  SDSE_RS13405 (S_dysgal_equisimilis_AC2713_606) - 537484..538278 (-) 795 WP_015057400.1 amino acid ABC transporter ATP-binding protein -
  SDSE_RS13410 (S_dysgal_equisimilis_AC2713_607) yycF 538537..539247 (+) 711 WP_003057225.1 response regulator YycF -
  SDSE_RS13415 (S_dysgal_equisimilis_AC2713_608) vicK 539240..540592 (+) 1353 WP_014612101.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SDSE_RS13420 (S_dysgal_equisimilis_AC2713_609) vicX 540596..541405 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  SDSE_RS13425 (S_dysgal_equisimilis_AC2713_610) - 541721..542584 (+) 864 WP_003059989.1 IS982 family transposase -
  SDSE_RS13430 (S_dysgal_equisimilis_AC2713_611) rnc 543131..543823 (+) 693 WP_003057240.1 ribonuclease III -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=45198 SDSE_RS13420 WP_003059746.1 540596..541405(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=45198 SDSE_RS13420 WP_003059746.1 540596..541405(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAGGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment