Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   HTZ78_RS09470 Genome accession   NZ_CP054306
Coordinates   2016787..2017215 (-) Length   142 a.a.
NCBI ID   WP_212715694.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011787..2022215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS09450 (HTZ78_09440) - 2012772..2015252 (+) 2481 WP_212715690.1 tetratricopeptide repeat protein -
  HTZ78_RS09455 (HTZ78_09445) - 2015258..2016031 (-) 774 WP_212715692.1 hypothetical protein -
  HTZ78_RS09460 (HTZ78_09450) - 2016130..2016489 (-) 360 WP_212722383.1 type IV pilin-like G/H family protein -
  HTZ78_RS18550 (HTZ78_09455) - 2016517..2016609 (-) 93 Protein_1878 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HTZ78_RS09470 (HTZ78_09460) pilA/pilA1 2016787..2017215 (-) 429 WP_212715694.1 type IV pilin protein Machinery gene
  HTZ78_RS09475 (HTZ78_09465) - 2017391..2018734 (-) 1344 WP_212715696.1 class I SAM-dependent methyltransferase -
  HTZ78_RS09480 (HTZ78_09470) - 2018956..2019951 (+) 996 WP_212715698.1 pentapeptide repeat-containing protein -
  HTZ78_RS09485 (HTZ78_09475) - 2019966..2021075 (-) 1110 WP_212715700.1 RNA polymerase sigma factor, RpoD/SigA family -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14926.06 Da        Isoelectric Point: 9.9154

>NTDB_id=451975 HTZ78_RS09470 WP_212715694.1 2016787..2017215(-) (pilA/pilA1) [Synechocystis sp. PCC 7338]
MASNFKFKLLSHLTQKKESEGFTLIELLVVVIIIGVLAAIALPNLLGQVGKARISEGRSGVGALNRAQQVYRTENPTFAT
AITSLDTKVAPGKYFTFSTAVASEVATSTANAINATGDNTTNQIGTVTYTPAAGTFTVVTSW

Nucleotide


Download         Length: 429 bp        

>NTDB_id=451975 HTZ78_RS09470 WP_212715694.1 2016787..2017215(-) (pilA/pilA1) [Synechocystis sp. PCC 7338]
ATGGCTAGTAACTTTAAATTCAAACTGCTTTCCCATCTTACCCAGAAGAAAGAAAGCGAAGGTTTTACCTTAATCGAACT
TTTAGTTGTTGTAATTATCATCGGTGTGCTTGCCGCCATTGCCCTACCCAACCTGTTAGGCCAAGTTGGTAAGGCTCGTA
TTTCCGAGGGACGAAGTGGTGTTGGTGCACTAAACCGCGCCCAACAGGTTTATCGTACTGAAAATCCCACCTTTGCAACC
GCTATTACCTCCCTGGATACTAAAGTTGCGCCCGGTAAGTACTTTACCTTTAGCACTGCTGTTGCTAGTGAAGTGGCAAC
GTCAACAGCAAACGCCATAAACGCGACCGGGGATAACACCACCAACCAAATTGGGACCGTTACCTACACTCCCGCCGCTG
GTACATTCACAGTAGTTACCAGTTGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(19-42)

Type IV pilin-like G and H, putative (Pilin_GH)

(55-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Synechocystis sp. PCC 6803

56.429

98.592

0.556