Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB/pilB1   Type   Machinery gene
Locus tag   HTZ78_RS08370 Genome accession   NZ_CP054306
Coordinates   1769628..1771646 (+) Length   672 a.a.
NCBI ID   WP_212721535.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1764628..1776646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS08355 (HTZ78_08350) - 1765251..1766285 (-) 1035 WP_212721528.1 AI-2E family transporter -
  HTZ78_RS08360 (HTZ78_08355) dnaK 1766334..1768412 (-) 2079 WP_212721531.1 molecular chaperone DnaK -
  HTZ78_RS08365 (HTZ78_08360) grpE 1768664..1769407 (-) 744 WP_212721534.1 nucleotide exchange factor GrpE -
  HTZ78_RS08370 (HTZ78_08365) pilB/pilB1 1769628..1771646 (+) 2019 WP_212721535.1 GspE/PulE family protein Machinery gene
  HTZ78_RS08375 (HTZ78_08370) - 1771729..1772883 (+) 1155 WP_212721538.1 class I SAM-dependent RNA methyltransferase -
  HTZ78_RS08380 (HTZ78_08375) - 1773009..1773440 (+) 432 WP_212721541.1 cupin domain-containing protein -
  HTZ78_RS08385 (HTZ78_08380) ftsY 1773637..1775160 (+) 1524 WP_212721543.1 signal recognition particle-docking protein FtsY -
  HTZ78_RS08390 (HTZ78_08385) - 1775168..1776040 (+) 873 WP_212721545.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75117.60 Da        Isoelectric Point: 5.3282

>NTDB_id=451972 HTZ78_RS08370 WP_212721535.1 1769628..1771646(+) (pilB/pilB1) [Synechocystis sp. PCC 7338]
MTSSSSSKKSRAVALRNYFSPFGNKLVAGGHVDAEQLRQALVQVKKTGRSLPEELKAVTGRELSPELLRQYKKNQLFELK
VLYGVDSVDPEVAPVATQQMAELIGRFFPLDTCRRFKFLPLAQQDGDPPSVLVAMVDPDNLAAQDELNRILRVKGFELRR
LVVTQDDFNQLLDQYYSIRDEWEAAQEKKDHERALDKLNDLTDIVGSIDMNLSEDKDDVDNALDSNDANQAPVINLVNKI
LAKALQEGTSDIHVEPQEETLRIRFRKDGVLNQAFDPLPRKITPAVVARFKIMADMDIAERRSPQDGKIRRIYQGRKVDF
RVNTLPSRYGEKVCLRILDNSATQLGLDFLITNPETLQTVRELAARPYGLMLVTGPTGSGKSTTLYSVLAERNSHEVNIN
TAEDPIEYALPGITQVQVIREKGMDFSNILRAFMRQDPDVILVGETRDKETAKTAIEAALTGHLVLTTLHTNDAAGAIAR
LDEMGVEPFMVSGSLLGVLAQRLMRKVCTECRIAYHPTKEELSRFGLSASGDEVVTFYKANTLSPDEIHLARQQGSLCQK
CSGSGYKGRVGVYEVMRNSERIAELINQGATTDRIKDCAVEEGMITLLAYSLNLVQEGYTTLEEVERVTFTDTGLESEMR
AKRKSALTCRVCAAELQQEWLDCPYCMTPRFS

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=451972 HTZ78_RS08370 WP_212721535.1 1769628..1771646(+) (pilB/pilB1) [Synechocystis sp. PCC 7338]
ATGACATCTTCCTCCTCTTCCAAGAAAAGCCGTGCCGTTGCCCTACGGAATTATTTTTCCCCCTTCGGTAATAAATTGGT
GGCGGGGGGCCATGTGGATGCGGAACAGTTGCGACAGGCCCTGGTTCAGGTTAAGAAAACTGGACGATCTTTGCCCGAAG
AGCTTAAGGCGGTCACTGGTCGGGAATTGTCTCCAGAACTACTAAGACAGTACAAAAAAAATCAGTTATTTGAGCTCAAA
GTACTCTATGGCGTGGACAGTGTCGATCCGGAGGTTGCTCCAGTTGCCACCCAGCAGATGGCGGAGTTGATCGGCCGATT
TTTCCCTTTGGATACCTGTCGGCGCTTCAAGTTTCTTCCCCTAGCCCAGCAGGATGGGGATCCTCCCAGTGTGTTGGTGG
CCATGGTAGATCCCGATAACTTGGCCGCCCAGGATGAGCTGAACCGGATTTTGCGGGTCAAGGGTTTTGAGTTACGCCGT
TTGGTGGTTACCCAGGATGATTTTAACCAACTCCTAGACCAGTATTATTCCATCCGGGATGAGTGGGAGGCGGCCCAGGA
GAAAAAAGATCACGAAAGGGCCCTTGATAAACTAAATGATTTGACGGATATTGTCGGCTCCATCGACATGAATTTGTCCG
AGGATAAGGATGACGTTGATAATGCGCTGGATTCTAACGACGCCAACCAAGCTCCGGTCATTAACCTAGTTAATAAAATT
TTGGCTAAGGCTTTACAGGAGGGCACTTCCGATATTCACGTTGAGCCCCAGGAAGAAACTCTGAGAATTCGTTTCCGTAA
GGATGGGGTTTTAAACCAGGCTTTTGATCCTCTGCCCCGGAAGATTACCCCCGCAGTGGTGGCCCGTTTCAAAATTATGG
CGGACATGGACATTGCCGAAAGGCGATCGCCCCAGGATGGCAAAATTCGCCGTATTTACCAGGGTAGGAAAGTGGATTTC
CGGGTTAACACCCTACCAAGCCGCTATGGAGAAAAGGTTTGTTTGCGGATTTTGGACAACTCCGCTACCCAACTGGGTTT
GGATTTCCTGATTACTAACCCTGAAACCCTACAAACGGTGCGGGAGCTGGCCGCCCGGCCCTATGGCTTGATGTTGGTGA
CGGGGCCTACCGGATCGGGGAAATCCACCACTCTGTACTCTGTACTGGCGGAACGCAATAGTCATGAGGTGAATATCAAC
ACGGCGGAAGATCCGATTGAGTATGCTCTACCGGGCATTACCCAGGTGCAGGTGATTCGGGAAAAGGGTATGGATTTTTC
CAATATTCTGCGGGCCTTTATGCGCCAGGATCCCGATGTGATTCTGGTGGGGGAAACCAGGGATAAGGAGACGGCAAAAA
CCGCCATTGAGGCGGCTCTGACTGGACACTTGGTTCTAACTACTCTCCACACCAATGATGCGGCGGGGGCGATCGCCAGG
TTAGATGAAATGGGAGTGGAACCGTTTATGGTTTCTGGGTCGTTGCTGGGGGTGCTGGCCCAACGGCTAATGCGGAAGGT
TTGTACGGAATGTCGGATTGCTTACCATCCCACTAAGGAAGAATTATCTCGCTTTGGGCTGTCTGCTTCCGGGGATGAAG
TGGTTACTTTTTATAAAGCCAATACCCTTAGTCCCGATGAGATTCATTTGGCGCGGCAACAAGGCAGTTTATGCCAAAAA
TGCAGTGGTAGTGGTTATAAGGGCCGGGTGGGGGTCTATGAGGTGATGCGTAATTCTGAGCGTATTGCTGAGTTGATTAA
CCAAGGGGCCACCACTGATCGCATTAAAGACTGTGCAGTGGAAGAGGGCATGATTACCCTATTGGCCTATAGTCTTAATT
TGGTGCAGGAAGGCTACACCACCTTAGAAGAAGTGGAACGGGTCACCTTCACCGATACCGGACTAGAGTCGGAAATGCGG
GCTAAGCGCAAGAGTGCCTTAACCTGTCGTGTCTGTGCGGCGGAACTGCAACAGGAATGGCTTGATTGTCCCTATTGCAT
GACTCCCCGTTTTAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(239-506)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(73-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB/pilB1 Synechocystis sp. PCC 6803

97.619

100

0.976