Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   HTZ78_RS07755 Genome accession   NZ_CP054306
Coordinates   1640179..1640856 (-) Length   225 a.a.
NCBI ID   WP_212721217.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1635179..1645856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS07725 (HTZ78_07720) - 1635582..1636262 (-) 681 WP_212721209.1 TrkA family potassium uptake protein -
  HTZ78_RS07730 (HTZ78_07725) bchB 1636461..1637987 (-) 1527 WP_212721211.1 ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B -
  HTZ78_RS07735 (HTZ78_07730) - 1638302..1638442 (+) 141 WP_212721213.1 hypothetical protein -
  HTZ78_RS07740 (HTZ78_07735) - 1638531..1639175 (+) 645 WP_212721215.1 Uma2 family endonuclease -
  HTZ78_RS07745 (HTZ78_07740) - 1639191..1639346 (-) 156 WP_249214016.1 DUF433 domain-containing protein -
  HTZ78_RS07750 (HTZ78_07745) - 1639478..1640092 (-) 615 WP_212721216.1 L,D-transpeptidase -
  HTZ78_RS07755 (HTZ78_07750) comF 1640179..1640856 (-) 678 WP_212721217.1 ComF family protein Machinery gene
  HTZ78_RS07760 (HTZ78_07755) - 1640905..1642041 (-) 1137 WP_212721218.1 cysteine desulfurase family protein -
  HTZ78_RS07765 (HTZ78_07760) - 1642134..1643339 (-) 1206 WP_212721224.1 SGNH/GDSL hydrolase family protein -
  HTZ78_RS07770 (HTZ78_07765) gnd 1643588..1645015 (+) 1428 WP_370630476.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25744.67 Da        Isoelectric Point: 10.7206

>NTDB_id=451971 HTZ78_RS07755 WP_212721217.1 1640179..1640856(-) (comF) [Synechocystis sp. PCC 7338]
MWQSIRSLLFQTPCPLCQKPSQDNFCRDCTGQILSHRFPSNLRQWQGKFPRFVWGQYEGQLRRVLTVMKFEQQPGIGLWL
GEQLAEQWLQQPQAKLKITPQVVPIPLSNRKQAERGFNQAERIAVGFCRLTGYTLRSQALQRPKDTQALFGLSPGDRQRE
LQSALATGPGFNTRQPWLILDDIITTGTTALEARRVMEEKGAKVWGIVAIATPSFSQPMELRQHR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=451971 HTZ78_RS07755 WP_212721217.1 1640179..1640856(-) (comF) [Synechocystis sp. PCC 7338]
ATGTGGCAATCAATTCGTTCCCTCTTGTTTCAAACTCCTTGTCCTCTTTGTCAAAAACCTAGTCAAGATAATTTTTGTCG
GGATTGCACTGGACAAATTTTGAGCCACCGTTTTCCCTCTAACCTTCGGCAATGGCAAGGAAAATTTCCCCGCTTTGTTT
GGGGCCAGTACGAAGGGCAACTGCGGCGAGTTTTAACGGTCATGAAGTTTGAGCAACAACCCGGCATTGGCCTCTGGTTG
GGAGAGCAGTTGGCAGAACAATGGTTACAACAACCCCAAGCTAAACTTAAAATAACTCCCCAGGTGGTGCCTATTCCCCT
TAGCAATCGCAAACAGGCTGAACGGGGATTTAACCAAGCGGAAAGAATTGCCGTCGGTTTTTGCCGCCTCACAGGTTATA
CCCTGCGCTCTCAGGCTTTACAACGGCCCAAGGATACCCAAGCGTTGTTTGGTCTTAGCCCCGGCGATCGCCAACGGGAA
TTGCAGTCTGCCCTCGCTACGGGGCCAGGGTTTAACACTCGCCAGCCTTGGTTAATTTTGGATGATATTATTACCACCGG
CACCACCGCCCTAGAAGCCCGACGGGTCATGGAAGAAAAGGGAGCTAAAGTGTGGGGCATCGTGGCGATCGCCACACCGT
CTTTTTCCCAGCCCATGGAACTTAGACAGCATCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Synechocystis sp. PCC 6803

87.5

99.556

0.871