Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA5   Type   Machinery gene
Locus tag   HTZ78_RS05325 Genome accession   NZ_CP054306
Coordinates   1095259..1095828 (+) Length   189 a.a.
NCBI ID   WP_223342263.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090259..1100828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS05305 (HTZ78_05300) - 1092051..1092554 (+) 504 WP_212720391.1 DNA recombination-mediator protein A -
  HTZ78_RS05310 (HTZ78_05305) - 1092584..1093393 (+) 810 WP_212720393.1 DNA methyltransferase -
  HTZ78_RS05315 (HTZ78_05310) - 1093383..1093880 (+) 498 WP_212720395.1 hypothetical protein -
  HTZ78_RS05320 (HTZ78_05315) - 1093962..1095134 (+) 1173 WP_212720404.1 DUF58 domain-containing protein -
  HTZ78_RS05325 (HTZ78_05320) pilA/pilA5 1095259..1095828 (+) 570 WP_223342263.1 type II secretion system protein J Machinery gene
  HTZ78_RS05330 (HTZ78_05325) - 1095883..1096446 (+) 564 WP_212720406.1 Tfp pilus assembly protein FimT/FimU -
  HTZ78_RS05335 (HTZ78_05330) - 1096532..1096702 (-) 171 WP_212720408.1 hypothetical protein -
  HTZ78_RS05340 (HTZ78_05335) - 1097129..1098064 (+) 936 WP_212720410.1 PilW family protein -
  HTZ78_RS05345 (HTZ78_05340) - 1098045..1098230 (-) 186 WP_212720418.1 hypothetical protein -
  HTZ78_RS05350 (HTZ78_05345) minE 1098243..1098533 (-) 291 WP_212720420.1 cell division topological specificity factor MinE -
  HTZ78_RS05355 (HTZ78_05350) minD 1098591..1099391 (-) 801 WP_194018716.1 septum site-determining protein MinD -
  HTZ78_RS05360 (HTZ78_05355) minC 1099457..1100200 (-) 744 WP_212720422.1 septum site-determining protein MinC -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20414.41 Da        Isoelectric Point: 8.7079

>NTDB_id=451970 HTZ78_RS05325 WP_223342263.1 1095259..1095828(+) (pilA/pilA5) [Synechocystis sp. PCC 7338]
MFKAISPSLRPRSALLWSLVCQSPPSDNKRSGDGDRGFTMFEVLIALMISFLFLTGTLNAMVMATVMRVKAERQAQAGYW
IKEDLERVRALADSYKDQSGCPTGVGTAFRDANNSGDANLDNNGLASLPAPANRTILGRTASLTRTPTVSGNVLQLNYIV
RNIEITDTNKSILASLYTEVLPAAALTCP

Nucleotide


Download         Length: 570 bp        

>NTDB_id=451970 HTZ78_RS05325 WP_223342263.1 1095259..1095828(+) (pilA/pilA5) [Synechocystis sp. PCC 7338]
ATGTTCAAGGCTATTTCACCCTCATTGCGACCCCGCAGTGCCTTGCTGTGGAGTTTGGTTTGTCAGTCCCCACCATCTGA
TAACAAACGTAGTGGCGATGGCGATCGGGGATTCACCATGTTTGAAGTGCTGATTGCTTTGATGATTTCCTTTTTGTTTC
TGACGGGAACCCTCAATGCCATGGTGATGGCAACGGTAATGCGGGTTAAAGCAGAAAGACAAGCCCAAGCTGGCTATTGG
ATCAAAGAAGATTTGGAAAGAGTTAGGGCTTTAGCTGACAGCTATAAAGATCAGAGTGGATGCCCAACTGGAGTGGGTAC
AGCCTTTCGTGATGCCAATAATAGTGGTGATGCCAACCTCGACAACAATGGTCTTGCGAGTCTGCCCGCTCCAGCAAATC
GAACAATTTTGGGAAGAACAGCAAGTTTAACTCGGACTCCTACCGTTTCCGGCAATGTTCTTCAGCTTAACTACATTGTG
AGGAACATTGAAATTACAGATACAAACAAAAGTATTCTTGCCAGTCTTTACACCGAAGTTCTTCCGGCCGCCGCTCTTAC
CTGTCCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA5 Synechocystis sp. PCC 6803

72.848

79.894

0.582