Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   HTZ78_RS02660 Genome accession   NZ_CP054306
Coordinates   555578..558868 (+) Length   1096 a.a.
NCBI ID   WP_212718787.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7338     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550578..563868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ78_RS02640 (HTZ78_02640) - 550854..551320 (-) 467 Protein_522 DUF1830 domain-containing protein -
  HTZ78_RS02645 (HTZ78_02645) - 551497..553092 (+) 1596 WP_212718784.1 photosystem II high light acclimation radical SAM protein -
  HTZ78_RS02650 (HTZ78_02650) - 553133..554170 (-) 1038 WP_370630475.1 RNA polymerase sigma factor, RpoD/SigA family -
  HTZ78_RS02655 (HTZ78_02655) era 554630..555568 (+) 939 WP_190596878.1 GTPase Era -
  HTZ78_RS02660 (HTZ78_02660) pilL-C 555578..558868 (+) 3291 WP_212718787.1 hybrid sensor histidine kinase/response regulator Machinery gene
  HTZ78_RS02665 (HTZ78_02665) - 558868..561981 (+) 3114 WP_212718792.1 alpha-mannosidase -
  HTZ78_RS02670 (HTZ78_02670) - 561974..562876 (+) 903 WP_223342052.1 ABC transporter permease -
  HTZ78_RS02675 (HTZ78_02675) - 562923..563408 (+) 486 WP_212718794.1 MEKHLA domain-containing protein -

Sequence

Protein


Download         Length: 1096 a.a.        Molecular weight: 120697.47 Da        Isoelectric Point: 4.3770

>NTDB_id=451965 HTZ78_RS02660 WP_212718787.1 555578..558868(+) (pilL-C) [Synechocystis sp. PCC 7338]
MTSDPNPAQAFENWFEEEEGEDAFTSLIGGDEENNGIEELDFGDLFEGEPTVIQEEGFGPSSPGKEEPPVRMTLDFNSPE
AELDALFTDEDAPTTVIDPFESSSWLEIDQMMEADPLASIPETTAPAYQTSGGLNDHDLAELQDLLGVGDAEPSITSPGL
HTFAGADLAPPSTGKVMLFAAIDDLDGLIDAPVLDENFSFTELESLIDTPAQKSFATISHPFRLPVAVEEEDEDEFKDLE
ALLEQADSNLGGGIASMGGARLPARPRQVKSRSFEQTMRVPIKQLDNLSNLIGELVVKRNRLEQDQERLRQFLDNLLNQA
QNLSDVGGRMQDLYERTLLEGALLASRNTSNRYQSSKTTYPDARATASGSSTMNEQPLDALEMDRFTGFHLLSQEMIELI
VRVRESASDIQYLVDETDQVARTLRQVTTQLQEGMTKSRMVPFTQTADRLPRAIREVSMKLNKRVNLEVEGGDVLIDKMI
LEHLYNPMTHLVNNAITHGIETPAQRQQLGKSAEGHLAVRAFLQGNQTLITVSDDGAGINTEMVKQKAVEKGLITRMEAQ
SLSQSEVYDLLFHAGFSTKDTADDFAGRGVGLDVVRTSLIDIRGAINIDSTVGKGTTFTIRLPLTLSICKALCCLSDRAR
IAFPMDGVEDTRDYLPKDIVTDEDGQKCVRYGKEALLLPLYPLKDLLNYNRQLSRGSVYGGKQEDDVVRVIIARGSSGNL
LALQIDQILGEEEIVIKQIEGPIPKPPGIAGATVRGDGSIMPIADVLELIEIAQGRLRTDSSGGLWRKTLTPTANEVHMD
PTVLIVDDSITVRELLSLSFKKAGFRVEQARDGQEAWEQLKSGLPCDLVFCDIEMPRKNGLELLSELQADEELSSIPVAL
LTSRGADRHRKVAAKLGATGYFTKPYTEKDILDAANRMLSGEVLLPGSTRKTNSILSRFKKARGNFSEEAPTIVKSNPGT
LRSTVLIIDDSVMVREMLSMTFKKADYHTETARDGQDAWEKLKSGLPCDLILCDIEMPRMNGLELLERIQEDPNLSRIPV
AMITSRGAQKMQRMAAEKGAKGYFVKPYIEETLLEASQRLIRGEVLLDLAALSAEE

Nucleotide


Download         Length: 3291 bp        

>NTDB_id=451965 HTZ78_RS02660 WP_212718787.1 555578..558868(+) (pilL-C) [Synechocystis sp. PCC 7338]
ATGACTAGCGATCCCAACCCAGCCCAGGCATTTGAAAATTGGTTTGAGGAAGAGGAGGGGGAAGATGCCTTTACTTCCCT
CATTGGTGGTGACGAAGAAAATAATGGCATTGAGGAATTGGATTTTGGTGATCTGTTTGAAGGAGAACCCACCGTTATCC
AGGAAGAAGGGTTTGGCCCATCGTCCCCAGGGAAGGAAGAGCCACCGGTTCGCATGACCCTAGATTTCAATTCCCCGGAA
GCGGAACTAGACGCTCTCTTTACCGATGAAGATGCCCCCACAACGGTGATCGATCCTTTTGAAAGCTCCAGTTGGCTAGA
AATTGACCAAATGATGGAAGCGGATCCCCTTGCTTCCATTCCCGAAACTACTGCCCCCGCCTATCAAACCAGTGGTGGAC
TCAATGACCATGACCTGGCGGAGTTGCAGGACTTATTAGGGGTAGGGGATGCTGAGCCCTCCATCACCAGCCCTGGTTTG
CATACCTTTGCCGGTGCCGATCTGGCGCCCCCATCGACAGGCAAAGTAATGCTGTTTGCGGCGATCGATGATTTGGATGG
ACTGATTGATGCCCCTGTGCTGGACGAGAATTTTTCCTTCACCGAACTAGAAAGCCTCATCGATACCCCAGCGCAAAAAT
CCTTTGCCACCATCAGCCATCCTTTTCGCTTGCCCGTGGCTGTGGAAGAGGAAGATGAGGACGAATTCAAAGACTTGGAA
GCCTTGCTAGAGCAAGCAGATAGCAATCTTGGGGGAGGCATAGCCAGTATGGGAGGGGCTCGATTGCCCGCCCGGCCCCG
GCAAGTTAAATCCCGTAGTTTTGAGCAGACCATGCGGGTCCCCATTAAACAACTGGATAATCTCAGCAACTTAATTGGAG
AACTAGTAGTCAAACGGAACCGCCTCGAACAGGATCAAGAACGTTTGCGGCAATTTTTGGATAATCTGCTTAACCAGGCC
CAAAACCTCAGCGATGTGGGGGGGCGTATGCAGGACTTATACGAGAGAACTTTGTTGGAGGGAGCTCTATTAGCTAGCCG
CAACACCAGCAACCGTTATCAATCCTCGAAAACGACCTACCCTGATGCCAGGGCCACGGCCTCCGGTTCTTCCACTATGA
ATGAACAGCCCTTGGATGCCCTGGAAATGGACCGTTTTACAGGCTTTCATCTACTTTCCCAGGAGATGATTGAACTGATT
GTACGGGTGCGGGAGTCTGCGTCAGACATTCAGTACTTGGTGGACGAGACTGATCAAGTTGCCAGAACCCTGAGACAGGT
AACCACCCAACTCCAAGAGGGGATGACCAAATCCCGCATGGTGCCCTTTACCCAAACTGCCGATCGCCTGCCGCGGGCCA
TTCGGGAAGTGTCCATGAAGCTCAATAAAAGGGTCAACCTGGAGGTGGAAGGGGGCGATGTGCTAATCGACAAAATGATT
TTGGAGCACCTCTACAACCCCATGACCCACCTGGTTAACAATGCCATCACCCACGGCATTGAAACCCCAGCGCAACGGCA
ACAATTGGGCAAATCTGCCGAAGGACATCTCGCCGTGCGGGCCTTTCTTCAAGGAAACCAGACCCTGATTACTGTCTCCG
ATGATGGAGCTGGCATCAACACGGAAATGGTCAAACAAAAGGCGGTGGAAAAGGGTCTCATCACCCGGATGGAGGCCCAG
AGTCTATCCCAATCGGAAGTGTATGACCTCTTGTTCCATGCCGGCTTTAGCACCAAGGATACGGCAGACGACTTTGCCGG
TAGGGGGGTAGGTCTGGATGTGGTACGCACCAGTTTGATTGATATCCGGGGAGCCATTAACATTGACTCCACTGTGGGTA
AGGGCACCACTTTTACCATCCGTTTGCCCCTCACCCTGAGCATTTGCAAAGCCCTCTGTTGTCTGAGCGATCGGGCTCGC
ATCGCCTTTCCCATGGACGGGGTGGAAGATACCAGGGACTATCTGCCCAAGGACATTGTCACCGATGAAGATGGTCAAAA
GTGCGTCAGATACGGCAAGGAAGCCTTGCTTTTACCCCTCTATCCCCTCAAAGATCTGCTCAACTATAACCGTCAATTGA
GCCGGGGGAGTGTTTATGGCGGCAAGCAAGAGGACGATGTGGTGCGGGTCATCATCGCCCGAGGCAGTTCTGGTAACCTC
CTAGCCCTGCAGATAGACCAGATCCTAGGGGAAGAAGAAATTGTGATCAAACAGATTGAAGGACCCATTCCCAAACCCCC
TGGTATTGCCGGGGCTACTGTGCGGGGGGATGGCAGTATCATGCCCATCGCCGATGTTTTAGAACTGATCGAAATTGCCC
AGGGTCGTCTCCGCACCGACAGTAGTGGCGGACTATGGCGCAAAACCCTCACCCCCACAGCCAATGAAGTCCACATGGAC
CCCACCGTACTGATTGTGGACGACTCCATTACGGTGCGGGAACTGCTATCCCTCAGCTTCAAAAAAGCGGGTTTTCGGGT
GGAGCAAGCTCGGGATGGTCAAGAAGCTTGGGAGCAGTTGAAGTCTGGGCTACCCTGTGATTTGGTCTTCTGTGACATTG
AGATGCCGCGTAAGAATGGCTTGGAATTGTTGTCGGAATTGCAAGCAGACGAAGAACTTTCTTCCATTCCAGTGGCCTTG
CTCACTTCTCGGGGAGCCGATCGCCATCGCAAAGTGGCGGCCAAGCTGGGGGCAACGGGTTATTTCACTAAGCCCTATAC
AGAAAAAGACATTTTGGATGCGGCTAACCGGATGTTGAGTGGAGAAGTATTACTCCCTGGCAGTACCCGCAAAACTAATT
CCATTCTGTCCCGCTTCAAAAAAGCCCGGGGCAACTTTTCTGAGGAAGCTCCTACCATTGTGAAGAGTAACCCTGGCACC
CTACGTTCAACGGTGTTAATTATCGATGACTCGGTAATGGTACGGGAAATGCTTTCCATGACCTTTAAAAAAGCCGATTA
CCACACAGAAACCGCCCGGGATGGCCAGGATGCTTGGGAAAAACTCAAGTCCGGCTTACCCTGTGATTTGATTCTCTGTG
ACATTGAAATGCCCCGCATGAACGGCCTGGAATTATTGGAGCGCATTCAAGAAGATCCCAACCTTTCCCGTATCCCAGTG
GCCATGATTACCTCCCGGGGAGCACAAAAAATGCAGCGCATGGCGGCGGAGAAAGGTGCCAAGGGATACTTTGTGAAGCC
ATACATTGAGGAAACTTTATTGGAAGCCAGTCAAAGGTTGATAAGAGGAGAAGTGTTGCTGGATTTGGCCGCCCTAAGTG
CAGAAGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(803-915)

Response regulator receiver domain (Response_reg)

(965-1076)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(488-625)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(276-332)

CheW-like domain (CheW)

(631-771)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

94.799

100

0.948