Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MS14393_RS04485 Genome accession   NZ_CP054303
Coordinates   937865..938461 (+) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain MS14393     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 932865..943461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS14393_RS04465 (MS14393_00876) - 933057..934814 (-) 1758 WP_016529118.1 AAA family ATPase -
  MS14393_RS04470 (MS14393_00877) matP 935000..935452 (+) 453 WP_002898404.1 macrodomain Ter protein MatP -
  MS14393_RS04475 (MS14393_00878) ompA 935584..936654 (-) 1071 WP_002898408.1 porin OmpA -
  MS14393_RS04480 (MS14393_00879) sulA 937007..937516 (-) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  MS14393_RS04485 (MS14393_00880) sxy/tfoX 937865..938461 (+) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  MS14393_RS04490 (MS14393_00881) yccS 938475..940610 (-) 2136 WP_002898422.1 YccS family putative transporter -
  MS14393_RS04495 (MS14393_00882) - 940628..941074 (-) 447 WP_002898425.1 YccF domain-containing protein -
  MS14393_RS04500 (MS14393_00883) helD 941199..943253 (+) 2055 WP_009308304.1 DNA helicase IV -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=451940 MS14393_RS04485 WP_004150836.1 937865..938461(+) (sxy/tfoX) [Klebsiella pneumoniae strain MS14393]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=451940 MS14393_RS04485 WP_004150836.1 937865..938461(+) (sxy/tfoX) [Klebsiella pneumoniae strain MS14393]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGATGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCTAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGTTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51