Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   BAMTA208_RS12620 Genome accession   NC_017188
Coordinates   2500310..2502661 (-) Length   783 a.a.
NCBI ID   WP_014470699.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2495310..2507661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS12590 (BAMTA208_13090) - 2495673..2496011 (-) 339 WP_014470695.1 YqxA family protein -
  BAMTA208_RS12595 (BAMTA208_13095) spoIIP 2496028..2497221 (-) 1194 WP_014470696.1 stage II sporulation protein P -
  BAMTA208_RS12600 (BAMTA208_13100) gpr 2497289..2498395 (-) 1107 WP_014470697.1 GPR endopeptidase -
  BAMTA208_RS12605 (BAMTA208_13105) rpsT 2498598..2498864 (+) 267 WP_003152876.1 30S ribosomal protein S20 -
  BAMTA208_RS12610 (BAMTA208_13110) holA 2498887..2499922 (-) 1036 Protein_2527 DNA polymerase III subunit delta -
  BAMTA208_RS20710 - 2499962..2500116 (-) 155 Protein_2528 hypothetical protein -
  BAMTA208_RS20330 (BAMTA208_13115) - 2500157..2500291 (+) 135 WP_003152870.1 YqzM family protein -
  BAMTA208_RS12620 (BAMTA208_13120) comEC 2500310..2502661 (-) 2352 WP_014470699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BAMTA208_RS12625 (BAMTA208_13125) - 2502662..2503231 (-) 570 WP_014470700.1 ComE operon protein 2 -
  BAMTA208_RS12630 (BAMTA208_13130) comEA 2503297..2503911 (-) 615 WP_014470701.1 helix-hairpin-helix domain-containing protein Machinery gene
  BAMTA208_RS12635 (BAMTA208_13135) comER 2503971..2504792 (+) 822 WP_014470702.1 late competence protein ComER -
  BAMTA208_RS12640 (BAMTA208_13140) - 2504861..2505598 (-) 738 WP_014470703.1 class I SAM-dependent DNA methyltransferase -
  BAMTA208_RS12645 (BAMTA208_13145) rsfS 2505595..2505951 (-) 357 WP_014470704.1 ribosome silencing factor -
  BAMTA208_RS12650 (BAMTA208_13150) yqeK 2505968..2506528 (-) 561 WP_014470705.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  BAMTA208_RS12655 (BAMTA208_13155) - 2506518..2507087 (-) 570 WP_014470706.1 nicotinate-nucleotide adenylyltransferase -
  BAMTA208_RS12660 (BAMTA208_13160) yhbY 2507098..2507388 (-) 291 WP_014470707.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87106.95 Da        Isoelectric Point: 9.3142

>NTDB_id=45189 BAMTA208_RS12620 WP_014470699.1 2500310..2502661(-) (comEC) [Bacillus amyloliquefaciens TA208]
MKYKYLLLPLAAVSATAGTAAANSFWVLFFFLLYLLFIIVKTKQHTPVIVCLVSFCLYFFLYTVCDAANVSRYQAGSYTE
QALIINIPKVDGAKMSAVIRTHDKEKWAASYKIRSLEEKRLIEQLEPGMRCTFTGSLEQPRHATVPGGFDYKEFLYSQHI
HWIFSVTSIKQCEKSEQPLFKLLNIRKNLISIIRNHVPESSAGIVEALTLGERFSIEDDILSAYQNLGVVHLMAISGMHV
GLITAGLFYALIRIGLTREKAGMLLLLFLPVYTLLSGAAPSVLRASLMLGFYIAGTLLKRSIHSSAALSMSYLLLLLFDP
YLLWQAGFQLSFAVSAALILSSSILKKAGKNRLAGLAMASFIAELSSLPFLLYHFQQISLVSFPMNMVMVPFYTLFVIPF
SVIGFLLLLLSRQAGEFLFYLFDLVMKPVHDFITYAASVDLFTMIASKPDFLSLLMLAVSVFTLFAALEKGGFLKLRKSA
LFFFAVLAYIMFRPYFSPWGEADMLDIGQGDSLFISAPHRKGTVMVDTGGVIAYSEESWKEKHHPYSIGEKVLVPFLNGK
GVKKLDALILTHADQDHIGEAGVLIKKHRVKRLIVPVGFVKEPKDGEILNMAKENNIPVAEAKRGDTITAGDLQFQVLSP
ESPGGRSKNDSSLVLWTVLGRVSWLLTGDLESDGETEVLKTYPNLKADILKAGHHGSKSSTSDAFLKQLQPETALISAGK
DNRYHHPHEEVLDRLKAYSVNVLRTDVSGTIRYRFKKGAGTFSVFPPYDIEETRAQEVKKTAD

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=45189 BAMTA208_RS12620 WP_014470699.1 2500310..2502661(-) (comEC) [Bacillus amyloliquefaciens TA208]
ATGAAATATAAATACCTTCTTCTGCCTCTGGCGGCGGTTTCTGCAACCGCGGGAACTGCCGCCGCTAATTCCTTCTGGGT
CCTATTCTTTTTCCTTCTGTATCTTCTCTTTATTATCGTAAAAACAAAGCAGCACACACCGGTTATCGTCTGCCTCGTTT
CTTTTTGTCTTTATTTCTTTCTGTATACGGTTTGTGACGCTGCGAATGTATCCCGGTATCAGGCCGGCAGCTATACTGAA
CAGGCTCTCATCATAAACATTCCGAAGGTTGACGGAGCGAAAATGTCAGCCGTTATCCGTACCCATGACAAAGAAAAATG
GGCCGCTTCGTACAAAATCCGGTCCCTTGAAGAAAAAAGACTCATTGAACAGCTGGAACCGGGGATGCGCTGTACGTTTA
CAGGCTCACTGGAACAGCCCCGACATGCGACGGTTCCCGGGGGTTTTGATTATAAGGAATTTCTTTATTCCCAGCATATT
CACTGGATATTTTCCGTTACTTCCATTAAGCAGTGCGAAAAATCCGAACAGCCGCTGTTTAAGCTTCTGAACATCAGAAA
GAATTTGATTTCGATCATTCGGAATCATGTACCTGAATCTTCCGCCGGAATTGTTGAGGCGCTGACCTTAGGTGAAAGAT
TTTCTATAGAGGACGATATACTGAGCGCTTATCAAAATTTGGGAGTCGTTCATTTAATGGCGATTTCCGGAATGCATGTC
GGTCTTATTACGGCGGGGTTATTTTATGCCCTTATCAGAATTGGACTGACAAGAGAAAAGGCGGGGATGTTGTTGCTGCT
TTTTTTGCCGGTGTATACGTTGTTAAGCGGGGCTGCCCCATCTGTGCTGCGCGCATCCCTCATGCTGGGATTTTATATCG
CCGGAACTCTTTTGAAACGCAGCATTCATTCCTCAGCTGCATTGTCCATGTCTTATCTGCTGCTTCTGCTGTTTGATCCT
TACCTCCTTTGGCAGGCGGGCTTCCAGCTTTCCTTTGCGGTAAGCGCCGCTTTAATTCTGTCATCCTCCATTTTAAAGAA
AGCAGGGAAAAACAGACTCGCCGGGCTTGCGATGGCTTCATTTATTGCGGAGCTCAGTTCGCTGCCGTTTCTTCTCTATC
ATTTTCAGCAGATTTCGCTCGTCAGTTTTCCGATGAATATGGTGATGGTGCCATTTTATACGTTATTTGTCATTCCGTTT
TCTGTCATCGGTTTTCTTCTTCTCTTACTTTCCAGGCAGGCGGGGGAATTTTTGTTTTACCTGTTTGATCTTGTGATGAA
GCCTGTGCATGATTTCATTACATATGCGGCATCCGTTGATTTATTTACAATGATTGCGTCAAAGCCTGACTTTCTGTCGC
TTCTTATGCTTGCGGTTTCCGTTTTTACGCTTTTTGCAGCTTTGGAAAAGGGAGGTTTTTTAAAGCTCAGGAAATCGGCT
CTTTTTTTCTTTGCGGTTTTGGCATATATAATGTTCCGTCCTTATTTCAGTCCTTGGGGAGAAGCGGATATGCTTGATAT
CGGGCAGGGAGACTCACTGTTTATAAGTGCCCCGCACCGTAAAGGTACCGTAATGGTTGATACAGGAGGAGTGATTGCTT
ATTCCGAAGAATCGTGGAAAGAAAAACACCACCCGTATTCTATCGGTGAGAAAGTTTTAGTTCCGTTTTTGAACGGAAAA
GGGGTGAAAAAGCTGGATGCGCTGATTTTAACCCATGCGGATCAGGATCATATCGGGGAAGCCGGAGTATTAATCAAAAA
ACATAGAGTGAAGCGGTTAATTGTCCCCGTGGGATTCGTGAAGGAACCGAAGGATGGGGAAATATTGAATATGGCGAAAG
AAAACAACATTCCCGTTGCTGAAGCAAAACGGGGCGATACCATAACAGCCGGTGATCTTCAGTTTCAGGTGCTGTCTCCG
GAGTCGCCTGGCGGAAGGAGTAAAAATGATTCGTCACTGGTGCTTTGGACGGTTTTAGGCAGAGTGAGCTGGCTTTTGAC
GGGAGATTTAGAATCGGACGGCGAAACAGAGGTGCTGAAAACGTATCCGAATCTGAAGGCTGATATATTGAAGGCCGGTC
ATCACGGCAGCAAAAGCTCTACGAGTGACGCCTTTTTGAAACAGCTTCAGCCGGAGACAGCACTGATTTCAGCAGGAAAA
GATAATCGTTATCATCATCCGCATGAAGAAGTGCTGGATCGTTTGAAAGCTTACTCTGTCAATGTGCTTCGCACCGATGT
CAGCGGAACTATTCGATACAGATTTAAAAAAGGCGCCGGAACGTTTTCTGTCTTCCCTCCATATGATATAGAAGAAACCA
GGGCGCAGGAAGTAAAAAAGACTGCCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-469)

Domain of unknown function (DUF4131) (DUF4131)

(27-171)

Metallo-beta-lactamase superfamily (Lactamase_B)

(508-719)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Bacillus subtilis subsp. subtilis str. 168

55.699

98.595

0.549

Multiple sequence alignment