Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   I9X27_RS23250 Genome accession   NZ_CP065866
Coordinates   5025182..5026624 (-) Length   480 a.a.
NCBI ID   WP_023104872.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain TJ2019-017     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5020182..5031624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I9X27_RS23220 (I9X27_23220) - 5020508..5021623 (+) 1116 WP_003101181.1 glycosyltransferase family 4 protein -
  I9X27_RS23225 (I9X27_23225) - 5021616..5022377 (+) 762 WP_023104871.1 DUF2334 domain-containing protein -
  I9X27_RS23230 (I9X27_23230) - 5022374..5023375 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  I9X27_RS23235 (I9X27_23235) - 5023350..5023562 (-) 213 WP_003101176.1 hypothetical protein -
  I9X27_RS23240 (I9X27_23240) purU 5023612..5024463 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  I9X27_RS23245 (I9X27_23245) mvaT 5024723..5025097 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  I9X27_RS23250 (I9X27_23250) sbcB 5025182..5026624 (-) 1443 WP_023104872.1 exodeoxyribonuclease I Machinery gene
  I9X27_RS23255 (I9X27_23255) - 5026849..5027586 (+) 738 WP_003101171.1 hypothetical protein -
  I9X27_RS23260 (I9X27_23260) - 5027624..5028421 (+) 798 WP_003123273.1 RDD family protein -
  I9X27_RS23265 (I9X27_23265) - 5028418..5029398 (+) 981 WP_003093893.1 stage II sporulation protein M -
  I9X27_RS23270 (I9X27_23270) - 5029385..5030956 (+) 1572 WP_003112782.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55447.68 Da        Isoelectric Point: 5.3013

>NTDB_id=451842 I9X27_RS23250 WP_023104872.1 5025182..5026624(-) (sbcB) [Pseudomonas aeruginosa strain TJ2019-017]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVYAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LDECQQKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=451842 I9X27_RS23250 WP_023104872.1 5025182..5026624(-) (sbcB) [Pseudomonas aeruginosa strain TJ2019-017]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTATACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGATGAGTGCCAGCAAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCAGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.176

88.542

0.435