Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HS093_RS05740 Genome accession   NZ_CP054282
Coordinates   1172012..1172641 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain IDR1900005638-01-02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167012..1177641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS093_RS05725 (HS093_05720) helD 1167254..1169308 (-) 2055 WP_182916906.1 DNA helicase IV -
  HS093_RS05730 (HS093_05725) yccF 1169431..1169877 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HS093_RS05735 (HS093_05730) yccS 1169887..1172049 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HS093_RS05740 (HS093_05735) sxy/tfoX 1172012..1172641 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HS093_RS05745 (HS093_05740) sulA 1172860..1173369 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HS093_RS05750 (HS093_05745) ompA 1173726..1174766 (+) 1041 WP_000750416.1 porin OmpA -
  HS093_RS05755 (HS093_05750) matP 1174842..1175294 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HS093_RS05760 (HS093_05755) ycbZ 1175480..1177240 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=451812 HS093_RS05740 WP_000839153.1 1172012..1172641(-) (sxy/tfoX) [Escherichia coli strain IDR1900005638-01-02]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451812 HS093_RS05740 WP_000839153.1 1172012..1172641(-) (sxy/tfoX) [Escherichia coli strain IDR1900005638-01-02]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1