Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HS092_RS11630 Genome accession   NZ_CP054278
Coordinates   2375104..2375718 (-) Length   204 a.a.
NCBI ID   WP_003035889.1    Uniprot ID   A0AAW7FTS6
Organism   Citrobacter freundii strain IDR1900015725-01-02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2370104..2380718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HS092_RS11615 (HS092_11610) helD 2370328..2372382 (-) 2055 WP_071698011.1 DNA helicase IV -
  HS092_RS11620 (HS092_11615) - 2372508..2372954 (+) 447 WP_003035892.1 YccF domain-containing protein -
  HS092_RS11625 (HS092_11620) yccS 2372973..2375126 (+) 2154 WP_032941200.1 YccS family putative transporter -
  HS092_RS11630 (HS092_11625) sxy/tfoX 2375104..2375718 (-) 615 WP_003035889.1 TfoX/Sxy family DNA transformation protein Regulator
  HS092_RS11635 (HS092_11630) sulA 2375936..2376445 (+) 510 WP_003035886.1 SOS-induced cell division inhibitor SulA -
  HS092_RS11640 (HS092_11635) ompA 2376803..2377861 (+) 1059 WP_003836839.1 porin OmpA -
  HS092_RS11645 (HS092_11640) matP 2377954..2378406 (-) 453 WP_003035881.1 macrodomain Ter protein MatP -
  HS092_RS11650 (HS092_11645) - 2378592..2380352 (+) 1761 WP_032936291.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23226.63 Da        Isoelectric Point: 8.6049

>NTDB_id=451798 HS092_RS11630 WP_003035889.1 2375104..2375718(-) (sxy/tfoX) [Citrobacter freundii strain IDR1900015725-01-02]
MKELSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVANGELYLRACEQSAQYCVQNSPVWLTFIKRGRPLVLN
YYQVNDALWQNQQQLVSLSRYSLDAAVKEKQSRFTQHRLRELPNMTFHLETLLNEVGIKDEGTMRSLGAQMCWLKLRQNN
PALTVKVLYALEGAVGGIHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=451798 HS092_RS11630 WP_003035889.1 2375104..2375718(-) (sxy/tfoX) [Citrobacter freundii strain IDR1900015725-01-02]
ATGAAAGAGCTTTCTTATGCAAGGATCTATAAATCGCAGGAATATCTGGCTTCTCTGGGGACAATTCACTATCGCTCACT
GTTTGGTGGCTACAGTCTGACGGTTGGCGATACGGTCTTTGCCATGGTCGCCAATGGTGAGTTGTATCTTCGCGCCTGTG
AACAGAGCGCCCAGTATTGTGTACAAAATTCTCCTGTCTGGCTGACATTTATTAAGCGAGGACGTCCTCTTGTACTTAAT
TATTACCAGGTGAACGATGCCCTGTGGCAAAACCAGCAGCAACTGGTGTCGTTATCGCGATATTCGTTGGATGCAGCGGT
TAAGGAAAAACAGAGTCGCTTTACCCAGCATCGTCTGCGGGAATTGCCGAATATGACGTTTCATCTGGAGACTCTGCTGA
ATGAAGTTGGAATTAAAGATGAGGGGACCATGCGGTCGTTGGGAGCACAAATGTGCTGGCTGAAACTTCGGCAAAATAAC
CCGGCTCTGACGGTAAAAGTACTCTATGCCCTTGAAGGCGCGGTAGGGGGGATACATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTAAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

68.627

100

0.686