Detailed information NTG0451697

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I9X26_RS07155
• Genome accession: NZ_CP065865
• Coordinates: 1539415..1540419 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain TJ2019-022
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1534415..1545419

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I9X26_RS07125 (I9X26_07125)	fghA	1534507..1535358 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
I9X26_RS07130 (I9X26_07130)	ispF	1535429..1535902 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
I9X26_RS07135 (I9X26_07135)	truD	1535899..1536966 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
I9X26_RS07140 (I9X26_07140)	surE	1536954..1537703 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
I9X26_RS07145 (I9X26_07145)	-	1537736..1538371 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
I9X26_RS07150 (I9X26_07150)	-	1538417..1539310 (+)	894	WP_034044933.1	peptidoglycan DD-metalloendopeptidase family protein	-
I9X26_RS07155 (I9X26_07155)	rpoS	1539415..1540419 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
I9X26_RS07160 (I9X26_07160)	fdxA	1540846..1541169 (-)	324	WP_003092272.1	ferredoxin FdxA	-
I9X26_RS07165 (I9X26_07165)	mutS	1541236..1543815 (-)	2580	WP_003105609.1	DNA mismatch repair protein MutS	-
I9X26_RS07170 (I9X26_07170)	-	1543875..1544849 (-)	975	WP_023117116.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=451697 I9X26_RS07155 WP_003113871.1 1539415..1540419(+) (rpoS) [Pseudomonas aeruginosa strain TJ2019-022]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=451697 I9X26_RS07155 WP_003113871.1 1539415..1540419(+) (rpoS) [Pseudomonas aeruginosa strain TJ2019-022]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGATAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653