Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BAMTA208_RS09820 Genome accession   NC_017188
Coordinates   1995388..1995852 (+) Length   154 a.a.
NCBI ID   WP_013352067.1    Uniprot ID   A0AAP7TCI0
Organism   Bacillus amyloliquefaciens TA208     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990388..2000852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS09795 (BAMTA208_10105) - 1990895..1991443 (-) 549 WP_013352072.1 hypothetical protein -
  BAMTA208_RS09800 (BAMTA208_10110) fadH 1991557..1992321 (-) 765 WP_013352071.1 2,4-dienoyl-CoA reductase -
  BAMTA208_RS09805 (BAMTA208_10115) - 1992465..1993328 (+) 864 WP_013352070.1 metallophosphoesterase -
  BAMTA208_RS09810 (BAMTA208_10120) - 1993403..1993897 (+) 495 WP_088030678.1 L,D-transpeptidase family protein -
  BAMTA208_RS09815 (BAMTA208_10125) - 1993973..1995265 (+) 1293 WP_013352068.1 MFS transporter -
  BAMTA208_RS09820 (BAMTA208_10130) kre 1995388..1995852 (+) 465 WP_013352067.1 YkyB family protein Regulator
  BAMTA208_RS09825 (BAMTA208_10135) cheV 1995889..1996800 (-) 912 WP_013352066.1 chemotaxis protein CheV -
  BAMTA208_RS21005 (BAMTA208_10140) - 1996989..1997150 (+) 162 WP_013352065.1 hypothetical protein -
  BAMTA208_RS09830 (BAMTA208_10145) - 1997352..1998565 (+) 1214 Protein_1952 aminotransferase A -
  BAMTA208_RS09835 (BAMTA208_10150) - 1998546..2000366 (-) 1821 WP_014470460.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17798.57 Da        Isoelectric Point: 10.4864

>NTDB_id=45169 BAMTA208_RS09820 WP_013352067.1 1995388..1995852(+) (kre) [Bacillus amyloliquefaciens TA208]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNLLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=45169 BAMTA208_RS09820 WP_013352067.1 1995388..1995852(+) (kre) [Bacillus amyloliquefaciens TA208]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACTTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCCCTTGCCG
CCAACAGACAGCAGCCCGCTTATCATAAACCCGTGTTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

93.506

100

0.935

Multiple sequence alignment