Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SDSE_RS10845 Genome accession   NC_019042
Coordinates   30750..31514 (+) Length   254 a.a.
NCBI ID   WP_012766408.1    Uniprot ID   A0A9X9GAR3
Organism   Streptococcus dysgalactiae subsp. equisimilis AC-2713     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25750..36514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDSE_RS10835 (S_dysgal_equisimilis_AC2713_92) - 28207..29409 (+) 1203 WP_003062289.1 CHAP domain-containing protein -
  SDSE_RS10840 (S_dysgal_equisimilis_AC2713_93) - 29563..30525 (+) 963 WP_003059859.1 ribose-phosphate diphosphokinase -
  SDSE_RS10845 (S_dysgal_equisimilis_AC2713_94) recO 30750..31514 (+) 765 WP_012766408.1 DNA repair protein RecO Machinery gene
  SDSE_RS10850 (S_dysgal_equisimilis_AC2713_95) plsX 31621..32628 (+) 1008 WP_015057179.1 phosphate acyltransferase PlsX -
  SDSE_RS10855 (S_dysgal_equisimilis_AC2713_96) - 32621..32863 (+) 243 WP_015057180.1 phosphopantetheine-binding protein -
  SDSE_RS10860 (S_dysgal_equisimilis_AC2713_97) purC 33028..33738 (+) 711 WP_003060240.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.21 Da        Isoelectric Point: 5.7481

>NTDB_id=45166 SDSE_RS10845 WP_012766408.1 30750..31514(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLSSVIQPLTAADFIFKLNESGLSYIDDYNHVDTYQQ
INQDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEVLTNIFEIQVLERFGIRINFHDCVFCHRVGL
PFDFSHHYSGVLCPEHYHKDDYRNHLDPNVIYLLDRFQTIQFDELRTISLNDEMKRKLRYFIDELYHDYVGIKLKSKTFI
DDLAKWGDIMKPKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=45166 SDSE_RS10845 WP_012766408.1 30750..31514(+) (recO) [Streptococcus dysgalactiae subsp. equisimilis AC-2713]
ATGCAGTTAAACGAGTCATTGGGAATTGTTCTTTTTAATAGGAATTATCGAGAAGATGATAAATTGGTCAAGATATTCAC
AGAGACAGCAGGCAAACGTATGTTTTTCGTGAAACATATTAGTCGTTCTAAACTTTCTTCCGTCATTCAACCTTTAACGG
CTGCTGACTTTATATTTAAGTTGAACGAATCAGGTCTTTCTTATATTGACGACTACAATCATGTGGATACTTATCAACAG
ATTAATCAGGACCTTTTTCGACTTTCCTATGCAAGTTATGTAGTGGCTTTGGCAGATGCCGCTATTTCAGATAATGAGCC
AGATCCTCACCTCTTTGCCTTTCTGAAAAAGACACTTGATTTAATGGAAGAGGGGTTGGATTACGAGGTTTTGACCAACA
TTTTTGAAATCCAAGTTTTAGAGCGTTTTGGGATTAGAATAAACTTTCATGACTGTGTTTTTTGTCATCGTGTCGGTTTA
CCATTTGATTTTTCACATCACTATTCGGGTGTGCTGTGCCCTGAACATTATCATAAAGATGACTACCGGAATCATCTAGA
TCCTAATGTCATCTATTTACTAGACCGTTTTCAAACCATTCAGTTTGATGAATTGAGAACCATTTCTTTAAATGATGAGA
TGAAAAGAAAACTTCGTTATTTTATTGATGAATTGTATCATGACTATGTAGGAATCAAGTTAAAAAGTAAAACGTTTATT
GATGATTTAGCTAAATGGGGCGATATTATGAAACCAAAGGACTAG

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X9GAR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.821

96.85

0.618

Multiple sequence alignment