Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BAMTA208_RS04945 Genome accession   NC_017188
Coordinates   996028..996606 (+) Length   192 a.a.
NCBI ID   WP_013351744.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens TA208     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 991028..1001606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMTA208_RS21515 - 991529..992044 (-) 516 WP_373418731.1 methyl-accepting chemotaxis protein -
  BAMTA208_RS21520 - 992336..992710 (-) 375 Protein_949 protoglobin domain-containing protein -
  BAMTA208_RS04930 (BAMTA208_04870) - 992945..994468 (-) 1524 WP_014470006.1 FAD-dependent oxidoreductase -
  BAMTA208_RS04935 (BAMTA208_04875) - 994592..995449 (+) 858 WP_013351742.1 SDR family oxidoreductase -
  BAMTA208_RS04940 (BAMTA208_04880) - 995479..995712 (-) 234 WP_013351743.1 IDEAL domain-containing protein -
  BAMTA208_RS04945 (BAMTA208_04885) comK 996028..996606 (+) 579 WP_013351744.1 competence protein ComK Regulator
  BAMTA208_RS04950 (BAMTA208_04890) - 996753..997124 (+) 372 WP_013351745.1 iron chaperone -
  BAMTA208_RS04955 (BAMTA208_04895) - 997161..998372 (-) 1212 WP_013351746.1 GNAT family N-acetyltransferase -
  BAMTA208_RS04960 (BAMTA208_04900) - 998526..999236 (-) 711 WP_014470007.1 YrpD family protein -
  BAMTA208_RS04965 (BAMTA208_04905) - 999432..999701 (+) 270 WP_013351748.1 excalibur calcium-binding domain-containing protein -
  BAMTA208_RS04970 (BAMTA208_04910) - 999733..1000050 (-) 318 WP_003155166.1 YbjQ family protein -
  BAMTA208_RS04975 (BAMTA208_04915) - 1000092..1001561 (-) 1470 WP_013351749.1 sodium:solute symporter family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22287.57 Da        Isoelectric Point: 8.1411

>NTDB_id=45158 BAMTA208_RS04945 WP_013351744.1 996028..996606(+) (comK) [Bacillus amyloliquefaciens TA208]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=45158 BAMTA208_RS04945 WP_013351744.1 996028..996606(+) (comK) [Bacillus amyloliquefaciens TA208]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATTGACAGAA
GCTGCCGCTACTTTGGCTCAAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCAGCAAGGCCTCAATGCGGCTGGATATCTCA
CGTGCACGTTAAAGATTTTCAGCCGACCGCATTCGATGACACGGCGGTCACGTTCTCAAACGGCAAAACGATGGAGCTGG
AAGTATCCTACCATTCTTTTGAAAACCAAGTCTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTACCCGAAAGAAGAGCGGACGAAAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.812

100

0.828

Multiple sequence alignment