Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HR072_RS15655 Genome accession   NZ_CP054230
Coordinates   3227664..3228293 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli strain EcPF14     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3222664..3233293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR072_RS15640 (HR072_15645) helD 3222906..3224960 (-) 2055 WP_001443200.1 DNA helicase IV -
  HR072_RS15645 (HR072_15650) yccF 3225083..3225529 (+) 447 WP_001261236.1 YccF domain-containing protein -
  HR072_RS15650 (HR072_15655) yccS 3225539..3227701 (+) 2163 WP_000875041.1 YccS family putative transporter -
  HR072_RS15655 (HR072_15660) sxy/tfoX 3227664..3228293 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HR072_RS15660 (HR072_15665) sulA 3228512..3229021 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HR072_RS15665 (HR072_15670) ompA 3229377..3230429 (+) 1053 WP_001528868.1 porin OmpA -
  HR072_RS15670 (HR072_15675) matP 3230507..3230959 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HR072_RS15675 (HR072_15680) ycbZ 3231145..3232905 (+) 1761 WP_000156504.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=451576 HR072_RS15655 WP_000839136.1 3227664..3228293(-) (sxy/tfoX) [Escherichia coli strain EcPF14]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451576 HR072_RS15655 WP_000839136.1 3227664..3228293(-) (sxy/tfoX) [Escherichia coli strain EcPF14]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99