Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HR073_RS07670 Genome accession   NZ_CP054227
Coordinates   1665972..1666601 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EcPF15     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1660972..1671601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR073_RS07650 (HR073_07645) ycbZ 1661374..1663134 (-) 1761 WP_000156482.1 Lon protease family protein -
  HR073_RS07655 (HR073_07650) matP 1663320..1663772 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HR073_RS07660 (HR073_07655) ompA 1663848..1664888 (-) 1041 WP_001309394.1 porin OmpA -
  HR073_RS07665 (HR073_07660) sulA 1665244..1665753 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HR073_RS07670 (HR073_07665) sxy/tfoX 1665972..1666601 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HR073_RS07675 (HR073_07670) yccS 1666564..1668726 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HR073_RS07680 (HR073_07675) yccF 1668736..1669182 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HR073_RS07685 (HR073_07680) helD 1669305..1671359 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=451545 HR073_RS07670 WP_000839153.1 1665972..1666601(+) (sxy/tfoX) [Escherichia coli strain EcPF15]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451545 HR073_RS07670 WP_000839153.1 1665972..1666601(+) (sxy/tfoX) [Escherichia coli strain EcPF15]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1