Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HR074_RS13945 Genome accession   NZ_CP054224
Coordinates   2871864..2872493 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EcPF16     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2866864..2877493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR074_RS13930 (HR074_13920) helD 2867106..2869160 (-) 2055 WP_001295354.1 DNA helicase IV -
  HR074_RS13935 (HR074_13925) yccF 2869283..2869729 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HR074_RS13940 (HR074_13930) yccS 2869739..2871901 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HR074_RS13945 (HR074_13935) sxy/tfoX 2871864..2872493 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HR074_RS13950 (HR074_13940) sulA 2872712..2873221 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HR074_RS13955 (HR074_13945) ompA 2873578..2874618 (+) 1041 WP_000750416.1 porin OmpA -
  HR074_RS13960 (HR074_13950) matP 2874694..2875146 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HR074_RS13965 (HR074_13955) ycbZ 2875332..2877092 (+) 1761 WP_032238298.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=451532 HR074_RS13945 WP_000839153.1 2871864..2872493(-) (sxy/tfoX) [Escherichia coli strain EcPF16]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451532 HR074_RS13945 WP_000839153.1 2871864..2872493(-) (sxy/tfoX) [Escherichia coli strain EcPF16]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1