Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   IAU57_RS06250 Genome accession   NZ_CP065848
Coordinates   1327979..1328503 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CMC-097     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1322979..1333503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU57_RS06230 (IAU57_06230) - 1323070..1325541 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  IAU57_RS06235 (IAU57_06235) pilM 1325726..1326790 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  IAU57_RS06240 (IAU57_06240) pilN 1326790..1327386 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  IAU57_RS06245 (IAU57_06245) pilO 1327383..1327982 (+) 600 WP_126550799.1 type 4a pilus biogenesis protein PilO Machinery gene
  IAU57_RS06250 (IAU57_06250) comL/pilP 1327979..1328503 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  IAU57_RS06255 (IAU57_06255) pilQ 1328557..1330701 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  IAU57_RS06260 (IAU57_06260) aroK 1330713..1331231 (+) 519 WP_003095833.1 shikimate kinase AroK -
  IAU57_RS06265 (IAU57_06265) aroB 1331281..1332387 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=451514 IAU57_RS06250 WP_003095836.1 1327979..1328503(+) (comL/pilP) [Pseudomonas aeruginosa strain CMC-097]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=451514 IAU57_RS06250 WP_003095836.1 1327979..1328503(+) (comL/pilP) [Pseudomonas aeruginosa strain CMC-097]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362