Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | BAMTA208_RS00220 | Genome accession | NC_017188 |
| Coordinates | 41156..41446 (-) | Length | 96 a.a. |
| NCBI ID | WP_186434521.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens TA208 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 36156..46446
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMTA208_RS00180 (BAMTA208_00150) | darA | 36173..36502 (+) | 330 | WP_004264734.1 | cyclic di-AMP receptor DarA | - |
| BAMTA208_RS00185 (BAMTA208_00155) | - | 36515..36955 (+) | 441 | WP_013350745.1 | YaaR family protein | - |
| BAMTA208_RS00190 (BAMTA208_00160) | holB | 36967..37956 (+) | 990 | WP_013350746.1 | DNA polymerase III subunit delta' | - |
| BAMTA208_RS00195 (BAMTA208_00165) | ricT | 37959..38786 (+) | 828 | WP_013350747.1 | competence/sporulation regulator complex protein RicT | - |
| BAMTA208_RS00200 (BAMTA208_00170) | yabA | 38801..39160 (+) | 360 | WP_013350748.1 | replication initiation-control protein YabA | - |
| BAMTA208_RS00205 (BAMTA208_00175) | - | 39221..39964 (+) | 744 | WP_014469594.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| BAMTA208_RS00210 (BAMTA208_00180) | - | 39951..40250 (+) | 300 | WP_013350750.1 | GIY-YIG nuclease family protein | - |
| BAMTA208_RS00215 (BAMTA208_00185) | rsmI | 40225..41106 (+) | 882 | WP_013350751.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| BAMTA208_RS00220 (BAMTA208_00190) | abrB | 41156..41446 (-) | 291 | WP_186434521.1 | transition state genes transcriptional regulator AbrB | Regulator |
| BAMTA208_RS00225 (BAMTA208_00195) | metG | 41929..43920 (+) | 1992 | WP_014469597.1 | methionine--tRNA ligase | - |
| BAMTA208_RS00230 (BAMTA208_00200) | - | 43997..44764 (+) | 768 | WP_014469598.1 | TatD family hydrolase | - |
| BAMTA208_RS00235 (BAMTA208_00205) | - | 44899..46218 (+) | 1320 | WP_014471348.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10727.49 Da Isoelectric Point: 6.3482
>NTDB_id=45144 BAMTA208_RS00220 WP_186434521.1 41156..41446(-) (abrB) [Bacillus amyloliquefaciens TA208]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKISLKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKISLKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK
Nucleotide
Download Length: 291 bp
>NTDB_id=45144 BAMTA208_RS00220 WP_186434521.1 41156..41446(-) (abrB) [Bacillus amyloliquefaciens TA208]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCAGCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCAGCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTCTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
96.875 |
100 |
0.969 |