Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HQ939_RS12080 Genome accession   NZ_CP054198
Coordinates   2462559..2463200 (+) Length   213 a.a.
NCBI ID   WP_021111957.1    Uniprot ID   A0A836MEW3
Organism   Glaesserella parasuis strain YHP170504     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2457559..2468200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ939_RS12060 (HQ939_12080) - 2458258..2459235 (-) 978 WP_021111403.1 DUF1852 domain-containing protein -
  HQ939_RS12065 (HQ939_12085) ffh 2459541..2460923 (+) 1383 WP_010786427.1 signal recognition particle protein -
  HQ939_RS12075 (HQ939_12095) - 2461198..2462295 (+) 1098 WP_148122925.1 ISAs1 family transposase -
  HQ939_RS12080 (HQ939_12100) sxy/tfoX 2462559..2463200 (+) 642 WP_021111957.1 TfoX/Sxy family DNA transformation protein Regulator
  HQ939_RS12085 (HQ939_12105) fumC 2463348..2464742 (+) 1395 WP_075605172.1 class II fumarate hydratase -
  HQ939_RS12090 (HQ939_12110) - 2464924..2466102 (+) 1179 WP_075606665.1 ATP-grasp domain-containing protein -
  HQ939_RS12095 (HQ939_12115) - 2466237..2466995 (+) 759 WP_005711160.1 esterase family protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.77 Da        Isoelectric Point: 9.7347

>NTDB_id=451415 HQ939_RS12080 WP_021111957.1 2462559..2463200(+) (sxy/tfoX) [Glaesserella parasuis strain YHP170504]
MKYIDVKTQHIRNLLYPIIGETQAKTYFSYYGIMKDGALFALYKNSKFYLHISGNCLHEVLTNPNISQLSDSKYGINSKS
FYLIPTEILYDLKPISHWITNGIQEIINTKHTQYIKKKRCIRTLPNMTIQLERTLKKLGINSIDELIDRGEVDIFVNLLK
MGIDADQAILFRLYGAINRQYIYTISDKTKQDLLNDANHALYEAGLRKRFNVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=451415 HQ939_RS12080 WP_021111957.1 2462559..2463200(+) (sxy/tfoX) [Glaesserella parasuis strain YHP170504]
ATGAAATACATTGATGTAAAAACACAACACATTAGAAATTTGCTTTATCCTATAATTGGAGAAACTCAAGCAAAAACATA
TTTTTCCTACTATGGAATAATGAAAGATGGAGCTCTGTTTGCTCTATATAAAAATAGTAAATTCTATCTTCATATCTCAG
GAAACTGTCTACATGAAGTACTAACTAATCCCAATATATCCCAACTGTCCGACTCTAAATATGGTATCAATTCTAAATCT
TTCTATTTGATTCCAACAGAAATTTTATATGATTTAAAACCCATCTCCCATTGGATAACCAATGGTATTCAAGAGATTAT
AAATACAAAACACACCCAATATATAAAAAAGAAAAGATGTATCCGTACCTTACCTAATATGACTATTCAACTAGAAAGGA
CATTGAAAAAGTTAGGTATCAACTCCATCGATGAACTGATTGATAGAGGTGAAGTGGATATATTCGTTAATCTTCTTAAG
ATGGGTATAGATGCTGATCAAGCTATTTTGTTCCGTCTTTATGGAGCAATTAATCGACAATATATTTATACTATCTCTGA
TAAGACTAAGCAGGATCTACTTAATGATGCAAATCATGCTCTATATGAGGCTGGCTTACGTAAGCGCTTTAATGTTAAAT
AA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(120-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836MEW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

100

100

1
  sxy/tfoX Actinobacillus suis H91-0380

41.429

98.592

0.408
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

39.234

98.122

0.385