Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HRL54_RS14620 Genome accession   NZ_CP054191
Coordinates   2979315..2979944 (-) Length   209 a.a.
NCBI ID   WP_235153860.1    Uniprot ID   -
Organism   Escherichia coli strain TH9F11     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2974315..2984944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRL54_RS14605 (HRL54_14500) helD 2974557..2976611 (-) 2055 WP_000420533.1 DNA helicase IV -
  HRL54_RS14610 (HRL54_14505) yccF 2976734..2977180 (+) 447 WP_001261231.1 YccF domain-containing protein -
  HRL54_RS14615 (HRL54_14510) yccS 2977190..2979352 (+) 2163 WP_000875020.1 YccS family putative transporter -
  HRL54_RS14620 (HRL54_14515) sxy/tfoX 2979315..2979944 (-) 630 WP_235153860.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HRL54_RS14625 (HRL54_14520) sulA 2980163..2980672 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HRL54_RS14630 (HRL54_14525) ompA 2981029..2982069 (+) 1041 WP_000750416.1 porin OmpA -
  HRL54_RS14635 (HRL54_14530) matP 2982145..2982597 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HRL54_RS14640 (HRL54_14535) ycbZ 2982783..2984543 (+) 1761 WP_072644848.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.06 Da        Isoelectric Point: 9.4014

>NTDB_id=451383 HRL54_RS14620 WP_235153860.1 2979315..2979944(-) (sxy/tfoX) [Escherichia coli strain TH9F11]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQKN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=451383 HRL54_RS14620 WP_235153860.1 2979315..2979944(-) (sxy/tfoX) [Escherichia coli strain TH9F11]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGAAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995