Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ABED_RS03750 Genome accession   NC_017187
Coordinates   751388..753238 (-) Length   616 a.a.
NCBI ID   WP_014468449.1    Uniprot ID   -
Organism   Aliarcobacter butzleri ED-1     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746388..758238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABED_RS03735 (ABED_0732) - 746800..747927 (+) 1128 WP_014468446.1 iron-containing alcohol dehydrogenase -
  ABED_RS11305 - 747976..748686 (-) 711 Protein_731 methyl-accepting chemotaxis protein -
  ABED_RS11310 - 749296..750237 (-) 942 Protein_732 Cache 3/Cache 2 fusion domain-containing protein -
  ABED_RS03745 (ABED_0734) - 750363..751385 (-) 1023 WP_014468448.1 alanine racemase -
  ABED_RS03750 (ABED_0735) uvrC 751388..753238 (-) 1851 WP_014468449.1 excinuclease ABC subunit UvrC Machinery gene
  ABED_RS03755 (ABED_0736) - 753395..755791 (+) 2397 WP_014468450.1 methyl-accepting chemotaxis protein -
  ABED_RS03760 (ABED_0737) - 756142..758145 (+) 2004 WP_014468451.1 HAMP domain-containing methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 72186.29 Da        Isoelectric Point: 9.0433

>NTDB_id=45137 ABED_RS03750 WP_014468449.1 751388..753238(-) (uvrC) [Aliarcobacter butzleri ED-1]
MNLQEKLQQLPNDAGVYQYFDKNGHLLYIGKAKILKNRVKSYFKFTPKLQPADKLSPRIYKMISEVESCEWIVVPNEHDA
LILENSLIKQLKPKYNILLRDDKTYPYIFVDFDEDFPRLDITRRIQKSKSIKYFGPYSTGARDMLDSIYEIVPLVQKKSC
VKGKKACLFHQIQKCLAPCENKISKEEYAKIVENALEYIYNKTKLISKLNEKMIQYSNDFRFEEAMTLRDRIKTIEKSQI
KSGIDLATNEDIDIFAINTNNKKAVIVRMFLRDGKLTSSSHDFLKIDNFDEAFEFDYQEAYERAIINYYDNEIPLLPKEI
LIAHELEITNELEEFLHTRFNKKIKLINPKKDKKREIVNIALNNCDELLRIENSKNQTSIYEELKELFNLQTLPYLIESF
DNSHMMGQATVGAMIVWNESLNTFDKKAFRHYNLESKDEYSQMKEMLIRRVESFEKNPAPDLWIIDGGETLLKLAFDIVQ
SVGVNLDIIAIAKEKIDAKAHRAKGSAKDIIHYKTKNGEFKSFNLLTSDKRLQFVQRQRDEAHRFAITFHKKQKRAQDKQ
ISLLQIKGIGEAKIKKLLLYFGEFEKIRKASFDELKTVLNEKDASTILDYFTNFKD

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=45137 ABED_RS03750 WP_014468449.1 751388..753238(-) (uvrC) [Aliarcobacter butzleri ED-1]
ATGAATTTACAAGAAAAGCTACAACAACTTCCTAATGATGCAGGAGTTTATCAATACTTTGACAAAAATGGTCATTTACT
TTATATAGGAAAAGCAAAGATTCTAAAAAATAGAGTTAAATCCTATTTTAAATTTACTCCAAAACTACAACCAGCAGATA
AATTAAGTCCAAGAATTTATAAAATGATTAGTGAAGTGGAAAGTTGCGAATGGATTGTTGTACCAAATGAACACGATGCC
TTAATTCTTGAAAACTCTTTAATCAAACAATTAAAACCGAAATATAATATTTTACTTCGAGATGATAAAACTTATCCATA
TATTTTTGTAGATTTTGATGAAGATTTTCCAAGGCTTGATATAACTAGAAGAATTCAAAAAAGTAAAAGTATCAAATATT
TTGGACCATATTCAACTGGTGCTAGAGATATGCTTGACTCTATTTATGAAATAGTTCCATTAGTACAAAAGAAATCTTGT
GTAAAGGGTAAAAAAGCCTGTCTTTTTCATCAAATACAAAAATGTTTAGCACCTTGTGAAAATAAAATCTCAAAAGAAGA
GTATGCAAAAATAGTTGAAAATGCTTTAGAGTACATATATAATAAAACAAAACTCATTTCAAAACTAAATGAAAAAATGA
TTCAATATTCAAATGATTTTAGATTTGAAGAAGCAATGACTTTAAGAGATAGAATAAAAACTATTGAAAAATCTCAAATA
AAATCTGGTATTGATTTAGCAACAAATGAAGATATTGATATTTTTGCAATAAATACAAACAATAAAAAAGCTGTAATAGT
AAGGATGTTTTTAAGAGATGGTAAATTGACTTCATCAAGTCATGATTTTTTAAAAATAGATAACTTTGATGAAGCGTTCG
AATTTGATTATCAAGAAGCTTATGAAAGAGCAATTATTAACTACTATGATAATGAAATTCCTCTTTTACCAAAAGAGATT
TTGATTGCGCATGAACTTGAAATTACAAATGAATTAGAAGAGTTTTTACACACAAGATTTAACAAAAAGATTAAACTAAT
CAATCCTAAAAAAGATAAAAAAAGAGAGATTGTAAATATAGCTTTAAATAACTGTGATGAATTATTAAGAATTGAAAATT
CAAAAAATCAAACATCAATTTATGAAGAACTAAAAGAGTTGTTTAACCTTCAAACGCTTCCATATTTAATAGAGAGTTTT
GATAACTCTCATATGATGGGACAAGCAACAGTTGGGGCAATGATTGTTTGGAATGAAAGTTTAAATACTTTTGATAAAAA
AGCTTTTAGACATTATAATCTTGAATCAAAAGATGAATACTCTCAAATGAAAGAGATGTTAATAAGAAGAGTTGAAAGTT
TTGAAAAAAATCCTGCTCCTGATTTATGGATAATAGATGGTGGAGAAACTTTGCTAAAATTAGCTTTTGATATAGTGCAA
TCTGTTGGTGTAAATCTTGATATAATAGCAATAGCAAAAGAAAAAATTGATGCAAAAGCCCATAGAGCAAAAGGGAGTGC
AAAAGATATAATTCACTATAAAACAAAAAATGGTGAATTTAAAAGTTTTAACTTATTAACAAGTGATAAAAGACTACAAT
TCGTTCAAAGACAAAGAGATGAAGCTCATAGATTTGCAATAACTTTTCATAAAAAGCAAAAAAGAGCACAAGATAAACAA
ATCTCTTTATTACAAATCAAAGGTATTGGTGAAGCAAAAATCAAAAAGCTTCTTTTATATTTTGGAGAATTTGAAAAGAT
TAGAAAAGCATCATTTGATGAACTAAAAACTGTTTTAAATGAAAAAGATGCAAGTACAATTTTAGATTATTTTACTAATT
TCAAGGATTAA

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(15-96)

UvrB/uvrC motif (UVR)

(204-237)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.907

97.89

0.508

Multiple sequence alignment