Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   HR084_RS18990 Genome accession   NZ_CP054177
Coordinates   3725273..3726418 (+) Length   381 a.a.
NCBI ID   WP_038429797.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3720273..3731418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS18970 (HR084_18970) albF 3720288..3721568 (+) 1281 WP_038429792.1 pitrilysin family protein -
  HR084_RS18975 (HR084_18975) albG 3721565..3722266 (+) 702 WP_038429793.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  HR084_RS18980 (HR084_18980) ywhL 3722272..3723648 (-) 1377 WP_038429794.1 YncE family protein -
  HR084_RS18985 (HR084_18985) ywhK 3723688..3725043 (-) 1356 WP_038429795.1 YncE family protein -
  HR084_RS21215 - 3725040..3725270 (-) 231 WP_038429796.1 hypothetical protein -
  HR084_RS18990 (HR084_18990) rapF 3725273..3726418 (+) 1146 WP_038429797.1 response regulator aspartate phosphatase RapF Regulator
  HR084_RS18995 (HR084_18995) phrF 3726402..3726521 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  HR084_RS19000 (HR084_19000) - 3726775..3727254 (+) 480 WP_015714892.1 hypothetical protein -
  HR084_RS19005 (HR084_19005) - 3727403..3728191 (+) 789 WP_015714893.1 membrane protein -
  HR084_RS19010 (HR084_19010) - 3728178..3728852 (+) 675 WP_015714894.1 hypothetical protein -
  HR084_RS19015 (HR084_19015) - 3728862..3729659 (+) 798 WP_231573542.1 hypothetical protein -
  HR084_RS19020 (HR084_19020) - 3729662..3730309 (+) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  HR084_RS19025 (HR084_19025) - 3730302..3730862 (+) 561 WP_015714897.1 hypothetical protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45578.05 Da        Isoelectric Point: 5.0624

>NTDB_id=451364 HR084_RS18990 WP_038429797.1 3725273..3726418(+) (rapF) [Bacillus subtilis strain JCL16]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAFSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=451364 HR084_RS18990 WP_038429797.1 3725273..3726418(+) (rapF) [Bacillus subtilis strain JCL16]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATACTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGAATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATACCATAGTAAGGGAATGGCTTTTTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.688

100

0.987
  rapC Bacillus subtilis subsp. subtilis str. 168

57.105

99.738

0.57