Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   HR084_RS14020 Genome accession   NZ_CP054177
Coordinates   2737086..2737832 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2732086..2742832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS13995 (HR084_13995) mreC 2732492..2733364 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  HR084_RS14000 (HR084_14000) mreB 2733395..2734408 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  HR084_RS14005 (HR084_14005) radC 2734500..2735195 (-) 696 WP_003246034.1 DNA repair protein RadC -
  HR084_RS14010 (HR084_14010) maf 2735232..2735801 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  HR084_RS14015 (HR084_14015) spoIIB 2735954..2736952 (-) 999 WP_038429403.1 stage II sporulation protein SpoIIB -
  HR084_RS14020 (HR084_14020) comC 2737086..2737832 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  HR084_RS14025 (HR084_14025) folC 2737972..2739264 (-) 1293 WP_038429404.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  HR084_RS14030 (HR084_14030) valS 2739324..2741966 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  HR084_RS14035 (HR084_14035) - 2742414..2742605 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=451346 HR084_RS14020 WP_072592551.1 2737086..2737832(-) (comC) [Bacillus subtilis strain JCL16]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=451346 HR084_RS14020 WP_072592551.1 2737086..2737832(-) (comC) [Bacillus subtilis strain JCL16]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996