Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   HR084_RS12680 Genome accession   NZ_CP054177
Coordinates   2500167..2500934 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2495167..2505934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS12660 (HR084_12660) ppsR 2495341..2496153 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  HR084_RS12665 (HR084_12665) ccpN 2496179..2496817 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  HR084_RS12670 (HR084_12670) glyS 2496950..2498989 (-) 2040 WP_173614192.1 glycine--tRNA ligase subunit beta -
  HR084_RS12675 (HR084_12675) glyQ 2498982..2499869 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  HR084_RS12680 (HR084_12680) recO 2500167..2500934 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  HR084_RS12685 (HR084_12685) yqzL 2500971..2501114 (-) 144 WP_003230053.1 YqzL family protein -
  HR084_RS12690 (HR084_12690) era 2501262..2502167 (-) 906 WP_003230051.1 GTPase Era -
  HR084_RS12695 (HR084_12695) - 2502148..2502558 (-) 411 WP_003230049.1 cytidine deaminase -
  HR084_RS12700 (HR084_12700) unpK 2502677..2503048 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  HR084_RS12705 (HR084_12705) ybeY 2503029..2503502 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  HR084_RS12710 (HR084_12710) pgpH 2503503..2505638 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=451338 HR084_RS12680 WP_015384118.1 2500167..2500934(-) (recO) [Bacillus subtilis strain JCL16]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=451338 HR084_RS12680 WP_015384118.1 2500167..2500934(-) (recO) [Bacillus subtilis strain JCL16]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992