Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   HR084_RS12405 Genome accession   NZ_CP054177
Coordinates   2450230..2451267 (-) Length   345 a.a.
NCBI ID   WP_173614185.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445230..2456267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS12355 (HR084_12355) tasA 2445327..2446112 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  HR084_RS12360 (HR084_12360) sipW 2446176..2446748 (-) 573 WP_003246088.1 signal peptidase I SipW -
  HR084_RS12365 (HR084_12365) tapA 2446732..2447493 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  HR084_RS12370 (HR084_12370) yqzG 2447765..2448091 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  HR084_RS12375 (HR084_12375) spoIITA 2448133..2448312 (-) 180 WP_029726723.1 YqzE family protein -
  HR084_RS12380 (HR084_12380) comGG 2448384..2448758 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  HR084_RS12385 (HR084_12385) comGF 2448759..2449142 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  HR084_RS12390 (HR084_12390) comGE 2449168..2449515 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  HR084_RS12395 (HR084_12395) comGD 2449499..2449930 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  HR084_RS12400 (HR084_12400) comGC 2449920..2450216 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  HR084_RS12405 (HR084_12405) comGB 2450230..2451267 (-) 1038 WP_173614185.1 comG operon protein ComGB Machinery gene
  HR084_RS12410 (HR084_12410) comGA 2451254..2452324 (-) 1071 WP_069322755.1 competence protein ComGA Machinery gene
  HR084_RS12415 (HR084_12415) corA 2452735..2453688 (-) 954 WP_029317911.1 magnesium transporter CorA -
  HR084_RS12420 (HR084_12420) yqhB 2453831..2455159 (+) 1329 WP_173614186.1 hemolysin family protein -
  HR084_RS12425 (HR084_12425) rsbRD 2455212..2456048 (-) 837 WP_173614187.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39764.14 Da        Isoelectric Point: 9.5257

>NTDB_id=451336 HR084_RS12405 WP_173614185.1 2450230..2451267(-) (comGB) [Bacillus subtilis strain JCL16]
MKKIRKVWSLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFDFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSPFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=451336 HR084_RS12405 WP_173614185.1 2450230..2451267(-) (comGB) [Bacillus subtilis strain JCL16]
ATGAAAAAGATTAGAAAAGTCTGGTCATTAAAGGATCAAGCCAGGTTATTAAAGCGGCTCGGTGAAATGACTGCGGGGGG
ATATACGCTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCGCGTTCAACCGATATGCTTTTTGATTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTCAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCGGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCCTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

99.381

93.623

0.93