Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HR084_RS12155 Genome accession   NZ_CP054177
Coordinates   2410269..2411072 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2405269..2416072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS12130 (HR084_12130) glpQB 2406406..2407137 (-) 732 WP_038429286.1 glycerophosphodiester phosphodiesterase -
  HR084_RS12135 (HR084_12135) yqiI 2407216..2407836 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  HR084_RS12140 (HR084_12140) - 2407856..2408152 (-) 297 WP_014480225.1 hypothetical protein -
  HR084_RS12145 (HR084_12145) - 2408460..2408612 (+) 153 WP_014480226.1 hypothetical protein -
  HR084_RS12150 (HR084_12150) yqiG 2408685..2409803 (+) 1119 WP_088326454.1 NADH-dependent flavin oxidoreductase -
  HR084_RS12155 (HR084_12155) spo0A 2410269..2411072 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  HR084_RS12160 (HR084_12160) spoIVB 2411348..2412628 (-) 1281 WP_173614175.1 SpoIVB peptidase -
  HR084_RS12165 (HR084_12165) recN 2412803..2414533 (-) 1731 WP_173614176.1 DNA repair protein RecN Machinery gene
  HR084_RS12170 (HR084_12170) argR 2414570..2415019 (-) 450 WP_029317927.1 arginine repressor ArgR -
  HR084_RS12175 (HR084_12175) yqxC 2415117..2415962 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=451327 HR084_RS12155 WP_003226427.1 2410269..2411072(-) (spo0A) [Bacillus subtilis strain JCL16]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=451327 HR084_RS12155 WP_003226427.1 2410269..2411072(-) (spo0A) [Bacillus subtilis strain JCL16]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1