Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   HR084_RS07790 Genome accession   NZ_CP054177
Coordinates   1496191..1496469 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain JCL16     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491191..1501469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS07770 (HR084_07770) panEB 1492379..1493290 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  HR084_RS07775 (HR084_07775) ampS 1493324..1494556 (-) 1233 WP_003232341.1 aminopeptidase -
  HR084_RS07780 (HR084_07780) ykpC 1494665..1494799 (-) 135 WP_003238865.1 protein YkpC -
  HR084_RS07785 (HR084_07785) mreBH 1494900..1495907 (-) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  HR084_RS07790 (HR084_07790) abrB 1496191..1496469 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  HR084_RS07795 (HR084_07795) kinC 1496659..1497945 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  HR084_RS07800 (HR084_07800) ykqA 1497961..1498788 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  HR084_RS07805 (HR084_07805) ktrC 1498851..1499516 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  HR084_RS07810 (HR084_07810) ade 1499672..1501405 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=451321 HR084_RS07790 WP_003244728.1 1496191..1496469(+) (abrB) [Bacillus subtilis strain JCL16]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=451321 HR084_RS07790 WP_003244728.1 1496191..1496469(+) (abrB) [Bacillus subtilis strain JCL16]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576