Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   HR084_RS07670 Genome accession   NZ_CP054177
Coordinates   1472111..1472686 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1467111..1477686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS07640 (HR084_07640) dapD 1467299..1468009 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  HR084_RS07645 (HR084_07645) dapI 1468079..1469203 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  HR084_RS07650 (HR084_07650) ykuS 1469265..1469510 (+) 246 WP_173614060.1 YkuS family protein -
  HR084_RS07655 (HR084_07655) mscT 1469547..1470350 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  HR084_RS07660 (HR084_07660) ahpA 1470587..1471129 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  HR084_RS07665 (HR084_07665) ykuV 1471199..1471645 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  HR084_RS07670 (HR084_07670) rok 1472111..1472686 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  HR084_RS07675 (HR084_07675) cse15 1472727..1473692 (-) 966 WP_029317734.1 spore protein Cse15 -
  HR084_RS07680 (HR084_07680) mobA 1473829..1474428 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  HR084_RS07685 (HR084_07685) moeB 1474479..1475498 (+) 1020 WP_173614061.1 molybdopterin-synthase adenylyltransferase MoeB -
  HR084_RS07690 (HR084_07690) glp 1475516..1476808 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  HR084_RS07695 (HR084_07695) mobB 1476769..1477290 (+) 522 WP_029725925.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=451320 HR084_RS07670 WP_003232378.1 1472111..1472686(+) (rok) [Bacillus subtilis strain JCL16]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=451320 HR084_RS07670 WP_003232378.1 1472111..1472686(+) (rok) [Bacillus subtilis strain JCL16]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1