Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   HR084_RS06225 Genome accession   NZ_CP054177
Coordinates   1209007..1210158 (+) Length   383 a.a.
NCBI ID   WP_038428787.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1204007..1215158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS06190 (HR084_06190) yjbB 1204677..1205894 (+) 1218 WP_173614405.1 MFS transporter -
  HR084_RS06195 (HR084_06195) yjbC 1206059..1206637 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  HR084_RS06200 (HR084_06200) spx 1206818..1207213 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  HR084_RS06205 (HR084_06205) yjbE 1207256..1207912 (-) 657 WP_003232944.1 TerC family protein -
  HR084_RS06210 (HR084_06210) - 1208082..1208222 (+) 141 WP_119122854.1 hypothetical protein -
  HR084_RS06215 (HR084_06215) mecA 1208189..1208845 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  HR084_RS06220 (HR084_06220) - 1208840..1208963 (-) 124 Protein_1167 hypothetical protein -
  HR084_RS06225 (HR084_06225) coiA 1209007..1210158 (+) 1152 WP_038428787.1 competence protein CoiA Machinery gene
  HR084_RS06230 (HR084_06230) pepF 1210388..1212217 (+) 1830 WP_173614024.1 oligoendopeptidase F -
  HR084_RS06235 (HR084_06235) - 1212255..1212422 (-) 168 WP_003244944.1 hypothetical protein -
  HR084_RS06240 (HR084_06240) spxH 1212737..1213636 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  HR084_RS06245 (HR084_06245) bhbI 1213633..1214031 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  HR084_RS06250 (HR084_06250) cwlQ 1214286..1215020 (-) 735 WP_250620459.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44898.97 Da        Isoelectric Point: 9.9268

>NTDB_id=451315 HR084_RS06225 WP_038428787.1 1209007..1210158(+) (coiA) [Bacillus subtilis strain JCL16]
MFSAVTEDGQMFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIKTINQRPDVMARIKEHMVAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRQMFYEKRQTSFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHKK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFVE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=451315 HR084_RS06225 WP_038428787.1 1209007..1210158(+) (coiA) [Bacillus subtilis strain JCL16]
TTGTTTAGTGCTGTGACTGAAGACGGCCAAATGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGATATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGTTGTATGTATGGCTGAAA
ACGCAACGGGCTTCACCAATATTGGAGCCGTATATAAAGACAATCAACCAAAGACCAGACGTCATGGCAAGGATCAAGGA
GCATATGGTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAACTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGACTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCTAAGGAAACAAATCGCCTTAGGCAGATGTTTTATGAGAAGCGGCAGACATCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAAAAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTGCTGAATCAGCCTGCAGGCGGCATACATTCCATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTGTAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

96.783

97.389

0.943