Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   HR084_RS05645 Genome accession   NZ_CP054177
Coordinates   1096243..1096821 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1091243..1101821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS05625 (HR084_05625) hemAT 1091754..1093052 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  HR084_RS05630 (HR084_05630) comW 1093191..1094720 (-) 1530 WP_173614020.1 FAD-dependent oxidoreductase -
  HR084_RS05635 (HR084_05635) yhxC 1094832..1095689 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  HR084_RS05640 (HR084_05640) yhzC 1095717..1095950 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  HR084_RS05645 (HR084_05645) comK 1096243..1096821 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  HR084_RS05650 (HR084_05650) yhxD 1096868..1097767 (-) 900 WP_101172512.1 SDR family oxidoreductase -
  HR084_RS05655 (HR084_05655) yhjA 1097984..1098253 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  HR084_RS05660 (HR084_05660) yhjB 1098297..1099766 (-) 1470 WP_003233134.1 sodium:solute symporter -
  HR084_RS05665 (HR084_05665) yhjC 1099763..1099963 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  HR084_RS05670 (HR084_05670) - 1100162..1100533 (-) 372 WP_014476361.1 hypothetical protein -
  HR084_RS05675 (HR084_05675) yhjE 1100685..1101308 (+) 624 WP_010886465.1 VTT domain-containing protein -
  HR084_RS05680 (HR084_05680) lepB 1101310..1101816 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=451307 HR084_RS05645 WP_029317573.1 1096243..1096821(+) (comK) [Bacillus subtilis strain JCL16]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=451307 HR084_RS05645 WP_029317573.1 1096243..1096821(+) (comK) [Bacillus subtilis strain JCL16]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995