Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   HR084_RS04580 Genome accession   NZ_CP054177
Coordinates   904533..905327 (+) Length   264 a.a.
NCBI ID   WP_173614007.1    Uniprot ID   -
Organism   Bacillus subtilis strain JCL16     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 899533..910327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR084_RS04550 (HR084_04550) sxzA 900372..901403 (+) 1032 WP_003233568.1 iron ABC transporter permease -
  HR084_RS04555 (HR084_04555) yfhB 901518..902399 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  HR084_RS04560 (HR084_04560) yfhC 902487..903071 (+) 585 WP_003243940.1 nitroreductase -
  HR084_RS04565 (HR084_04565) yfhD 903110..903301 (-) 192 WP_003233561.1 YfhD family protein -
  HR084_RS04570 (HR084_04570) yfhE 903368..903478 (-) 111 WP_003223230.1 YfhE family protein -
  HR084_RS04575 (HR084_04575) yfhF 903533..904444 (-) 912 WP_173614006.1 TIGR01777 family oxidoreductase -
  HR084_RS04580 (HR084_04580) recX 904533..905327 (+) 795 WP_173614007.1 recombination regulator RecX Regulator
  HR084_RS04585 (HR084_04585) yfhH 905329..905643 (+) 315 WP_003244592.1 YfhH family protein -
  HR084_RS04590 (HR084_04590) yfhI 905786..906979 (+) 1194 WP_003243500.1 MFS transporter -
  HR084_RS04595 (HR084_04595) sspK 907011..907163 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  HR084_RS04600 (HR084_04600) yfhJ 907288..907557 (+) 270 WP_003243789.1 YfhJ family protein -
  HR084_RS04605 (HR084_04605) yfhK 907702..908220 (+) 519 WP_015252515.1 SH3 domain-containing protein -
  HR084_RS04610 (HR084_04610) spdL 908305..908637 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  HR084_RS04615 (HR084_04615) ephM 908624..909484 (+) 861 WP_014479220.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31063.29 Da        Isoelectric Point: 6.6686

>NTDB_id=451302 HR084_RS04580 WP_173614007.1 904533..905327(+) (recX) [Bacillus subtilis strain JCL16]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSLPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKEFKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=451302 HR084_RS04580 WP_173614007.1 904533..905327(+) (recX) [Bacillus subtilis strain JCL16]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTTTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCTTCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAATTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACGG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992