Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   STRR_RS01275 Genome accession   NZ_CP065788
Coordinates   237329..237925 (-) Length   198 a.a.
NCBI ID   WP_071417483.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain RR     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232329..242925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STRR_RS01265 (STRR_01265) - 233655..234911 (+) 1257 WP_011681055.1 ISL3-like element ISSth1 family transposase -
  STRR_RS01270 (STRR_01270) pbp1a 234987..237329 (-) 2343 WP_071417484.1 penicillin-binding protein PBP1A -
  STRR_RS01275 (STRR_01275) recU 237329..237925 (-) 597 WP_071417483.1 Holliday junction resolvase RecU Machinery gene
  STRR_RS01280 (STRR_01280) - 238002..238517 (+) 516 WP_002949411.1 DUF1273 domain-containing protein -
  STRR_RS01285 (STRR_01285) gpsB 238626..238958 (+) 333 WP_014607932.1 cell division regulator GpsB -
  STRR_RS01295 (STRR_01295) - 239495..240661 (+) 1167 WP_014607933.1 class I SAM-dependent RNA methyltransferase -
  STRR_RS01300 (STRR_01300) - 240664..242523 (+) 1860 WP_071417482.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22828.36 Da        Isoelectric Point: 10.0437

>NTDB_id=451240 STRR_RS01275 WP_071417483.1 237329..237925(-) (recU) [Streptococcus thermophilus strain RR]
MVNYPHQISRKIAQVRTKKSNRVDFANRGMDFESAINATNDYYLSRGLAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVYKGYYIDFEAKETRQKTSMPMKNFHAHQIKHMSQVINQDGICFVLLHFSTLKETYLLPAKDLIAFYQIDKG
TKSMPLDYIKKRGYAIAESAYPQVPYLEIIEKLLGGNT

Nucleotide


Download         Length: 597 bp        

>NTDB_id=451240 STRR_RS01275 WP_071417483.1 237329..237925(-) (recU) [Streptococcus thermophilus strain RR]
ATGGTAAACTATCCCCATCAGATATCTCGTAAGATAGCACAAGTACGTACTAAAAAATCTAATAGAGTTGACTTTGCCAA
TCGGGGGATGGACTTTGAATCTGCTATTAATGCGACTAATGATTACTATTTGTCGCGTGGCTTAGCCGTTATTCATAAGA
AACCTACACCGGTTCAGATCGTCAAAGTCGATTATCCAAAACGCTCACGAGCAAAGATTGTAGAAGCTTACTTTAGGCAA
GCCTCAACTACTGACTACTCTGGCGTTTACAAAGGATACTATATTGATTTTGAAGCCAAGGAGACACGGCAAAAGACATC
TATGCCTATGAAAAACTTTCATGCGCATCAAATTAAGCACATGTCTCAGGTCATCAATCAAGATGGAATCTGCTTCGTGC
TACTCCACTTTTCAACGCTTAAGGAAACCTACCTTCTGCCTGCCAAAGACTTAATCGCTTTTTATCAAATTGATAAGGGG
ACAAAATCAATGCCTCTTGATTATATCAAAAAAAGAGGTTATGCAATCGCAGAATCAGCTTATCCTCAAGTTCCTTATTT
AGAGATCATTGAAAAATTATTAGGTGGTAACACATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.754

100

0.51