Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDBI1_RS06550 | Genome accession | NC_017179 |
| Coordinates | 1408124..1409170 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile BI1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1376192..1457933 | 1408124..1409170 | within | 0 |
Gene organization within MGE regions
Location: 1376192..1457933
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDBI1_RS06415 (CDBI1_05960) | - | 1377183..1377851 (-) | 669 | WP_009892970.1 | YwaF family protein | - |
| CDBI1_RS06420 (CDBI1_05965) | - | 1378120..1378260 (+) | 141 | WP_003419462.1 | hypothetical protein | - |
| CDBI1_RS06425 (CDBI1_05970) | - | 1378435..1378755 (-) | 321 | WP_003428248.1 | MazG-like family protein | - |
| CDBI1_RS06430 (CDBI1_05975) | - | 1378875..1379612 (-) | 738 | WP_003428245.1 | NAD-dependent protein deacylase | - |
| CDBI1_RS06435 (CDBI1_05980) | acd | 1379827..1381650 (+) | 1824 | WP_009892971.1 | N-acetylglucosaminidase | - |
| CDBI1_RS06440 (CDBI1_05985) | - | 1381865..1386163 (+) | 4299 | WP_009892973.1 | PolC-type DNA polymerase III | - |
| CDBI1_RS06445 (CDBI1_05990) | rimP | 1386367..1386828 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDBI1_RS06450 (CDBI1_05995) | nusA | 1386858..1388012 (+) | 1155 | WP_009889093.1 | transcription termination factor NusA | - |
| CDBI1_RS06455 (CDBI1_06000) | rnpM | 1388019..1388300 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDBI1_RS06460 (CDBI1_06005) | - | 1388290..1388601 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDBI1_RS06465 (CDBI1_06010) | infB | 1388623..1390563 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDBI1_RS06470 (CDBI1_06015) | rbfA | 1390606..1390986 (+) | 381 | WP_009889095.1 | 30S ribosome-binding factor RbfA | - |
| CDBI1_RS06475 (CDBI1_06020) | - | 1390967..1391950 (+) | 984 | WP_095890265.1 | DHH family phosphoesterase | - |
| CDBI1_RS06480 (CDBI1_06025) | truB | 1391963..1392868 (+) | 906 | WP_009889097.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDBI1_RS06485 (CDBI1_06030) | - | 1392999..1393928 (+) | 930 | WP_009889098.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDBI1_RS06490 (CDBI1_06035) | rpsO | 1394032..1394289 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDBI1_RS06495 (CDBI1_06040) | - | 1394529..1395374 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDBI1_RS06500 (CDBI1_06045) | pnp | 1395499..1397610 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDBI1_RS06505 (CDBI1_06050) | - | 1397876..1398619 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDBI1_RS06510 (CDBI1_06055) | - | 1398777..1400024 (+) | 1248 | WP_009889101.1 | M16 family metallopeptidase | - |
| CDBI1_RS06515 (CDBI1_06060) | - | 1400059..1400304 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDBI1_RS06520 (CDBI1_06065) | dapG | 1400314..1401537 (+) | 1224 | WP_009889103.1 | aspartate kinase | - |
| CDBI1_RS06525 (CDBI1_06070) | - | 1401650..1402384 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDBI1_RS06530 (CDBI1_06075) | - | 1402507..1404918 (+) | 2412 | WP_009889104.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDBI1_RS06535 (CDBI1_06080) | mnmH | 1404921..1405979 (+) | 1059 | WP_009889105.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDBI1_RS06540 (CDBI1_06085) | rimO | 1405973..1407307 (+) | 1335 | WP_009892976.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDBI1_RS06545 (CDBI1_06090) | pgsA | 1407294..1407836 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDBI1_RS06550 (CDBI1_06095) | recA | 1408124..1409170 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDBI1_RS06555 (CDBI1_06100) | rny | 1409346..1410887 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDBI1_RS06560 (CDBI1_06105) | - | 1411522..1413303 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDBI1_RS06565 (CDBI1_06110) | lepB | 1413385..1413915 (-) | 531 | WP_009889108.1 | signal peptidase I | - |
| CDBI1_RS06570 (CDBI1_06115) | - | 1413955..1414779 (-) | 825 | WP_009889109.1 | undecaprenyl-diphosphate phosphatase | - |
| CDBI1_RS06575 (CDBI1_06120) | - | 1415036..1415944 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDBI1_RS06580 (CDBI1_06125) | purB | 1416088..1417533 (+) | 1446 | WP_009889111.1 | adenylosuccinate lyase | - |
| CDBI1_RS06585 (CDBI1_06130) | - | 1417844..1418296 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDBI1_RS06590 (CDBI1_06135) | - | 1418709..1420286 (+) | 1578 | WP_009889112.1 | PTS transporter subunit EIIC | - |
| CDBI1_RS06595 (CDBI1_06140) | - | 1420445..1421197 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDBI1_RS06600 (CDBI1_06145) | - | 1421330..1422676 (+) | 1347 | WP_009892979.1 | 6-phospho-alpha-glucosidase | - |
| CDBI1_RS06605 (CDBI1_06150) | - | 1422788..1423984 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDBI1_RS06610 (CDBI1_06155) | galT | 1424369..1425319 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| CDBI1_RS06615 (CDBI1_06160) | - | 1425480..1426232 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDBI1_RS06620 (CDBI1_06165) | - | 1426324..1427100 (-) | 777 | WP_009889114.1 | 3'-5' exonuclease | - |
| CDBI1_RS06625 (CDBI1_06170) | - | 1427415..1429313 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDBI1_RS06630 (CDBI1_06175) | - | 1429441..1430562 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDBI1_RS06635 (CDBI1_06180) | - | 1430761..1431093 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDBI1_RS06640 (CDBI1_06185) | - | 1431080..1432138 (+) | 1059 | WP_012816112.1 | DUF1700 domain-containing protein | - |
| CDBI1_RS06645 (CDBI1_06190) | - | 1432131..1433201 (+) | 1071 | WP_009889118.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDBI1_RS06650 (CDBI1_06195) | - | 1433303..1433839 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDBI1_RS06655 (CDBI1_06200) | - | 1433956..1434663 (+) | 708 | WP_009889121.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDBI1_RS06660 (CDBI1_06205) | - | 1434665..1435381 (+) | 717 | WP_009889122.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDBI1_RS06665 (CDBI1_06210) | - | 1435383..1436141 (+) | 759 | WP_009889124.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDBI1_RS06670 (CDBI1_06215) | - | 1436285..1437673 (+) | 1389 | WP_009889126.1 | two-component system sensor histidine kinase | - |
| CDBI1_RS06675 (CDBI1_06220) | - | 1437749..1438570 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDBI1_RS06680 (CDBI1_06225) | - | 1438821..1439975 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| CDBI1_RS06685 (CDBI1_06230) | - | 1440158..1440358 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDBI1_RS06690 (CDBI1_06235) | - | 1440779..1441207 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDBI1_RS06695 (CDBI1_06240) | - | 1441350..1442105 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDBI1_RS06700 (CDBI1_06250) | - | 1442806..1443312 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDBI1_RS06705 (CDBI1_06255) | - | 1443394..1443714 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDBI1_RS06710 (CDBI1_06260) | - | 1443883..1444080 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDBI1_RS06715 (CDBI1_06265) | - | 1444185..1444625 (+) | 441 | WP_009889133.1 | hypothetical protein | - |
| CDBI1_RS06720 (CDBI1_06270) | - | 1444874..1445317 (+) | 444 | WP_009889135.1 | phage tail terminator family protein | - |
| CDBI1_RS06725 (CDBI1_06275) | - | 1445322..1446386 (+) | 1065 | WP_009889137.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDBI1_RS06730 (CDBI1_06280) | - | 1446400..1446828 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDBI1_RS06735 (CDBI1_06285) | - | 1446942..1447388 (+) | 447 | WP_009889139.1 | phage tail assembly chaperone | - |
| CDBI1_RS06740 (CDBI1_06290) | - | 1447415..1447582 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDBI1_RS06745 (CDBI1_06295) | - | 1447582..1450035 (+) | 2454 | WP_009889141.1 | hypothetical protein | - |
| CDBI1_RS06750 (CDBI1_06300) | - | 1450035..1450457 (+) | 423 | WP_009889143.1 | phage baseplate protein | - |
| CDBI1_RS06755 (CDBI1_06305) | - | 1450739..1452268 (+) | 1530 | WP_009889145.1 | NlpC/P60 family protein | - |
| CDBI1_RS06760 (CDBI1_06310) | - | 1452284..1452610 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| CDBI1_RS06765 (CDBI1_06315) | - | 1452610..1453038 (+) | 429 | WP_003428161.1 | DUF2634 domain-containing protein | - |
| CDBI1_RS06770 (CDBI1_06320) | - | 1453031..1454083 (+) | 1053 | WP_009889148.1 | baseplate J/gp47 family protein | - |
| CDBI1_RS06775 (CDBI1_06325) | - | 1454080..1454778 (+) | 699 | WP_009889149.1 | putative phage tail protein | - |
| CDBI1_RS06780 (CDBI1_06330) | - | 1454779..1455765 (+) | 987 | WP_009889153.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=45121 CDBI1_RS06550 WP_003428218.1 1408124..1409170(+) (recA) [Clostridioides difficile BI1]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=45121 CDBI1_RS06550 WP_003428218.1 1408124..1409170(+) (recA) [Clostridioides difficile BI1]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.