Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HRE60_RS02050 Genome accession   NZ_CP054153
Coordinates   399859..401664 (+) Length   601 a.a.
NCBI ID   WP_181670971.1    Uniprot ID   A0A7L6WI38
Organism   Streptococcus salivarius strain DB-B5     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 394859..406664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRE60_RS02040 (HRE60_02040) - 395648..397585 (+) 1938 WP_181670969.1 GbpC/Spa domain-containing protein -
  HRE60_RS02045 (HRE60_02045) - 398889..399848 (+) 960 WP_181670970.1 competence protein CoiA family protein -
  HRE60_RS02050 (HRE60_02050) pepF 399859..401664 (+) 1806 WP_181670971.1 oligoendopeptidase F Regulator
  HRE60_RS02055 (HRE60_02055) - 401877..403097 (+) 1221 WP_181670972.1 OFA family MFS transporter -
  HRE60_RS02060 (HRE60_02060) - 403169..403876 (+) 708 WP_181670973.1 O-methyltransferase -
  HRE60_RS02065 (HRE60_02065) - 403938..405080 (+) 1143 WP_175061655.1 peptidyl-prolyl cis-trans isomerase -
  HRE60_RS02070 (HRE60_02070) - 405149..405286 (+) 138 WP_153300621.1 hypothetical protein -
  HRE60_RS02075 (HRE60_02075) - 405419..405904 (+) 486 WP_064523790.1 LURP-one-related family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68998.04 Da        Isoelectric Point: 4.5805

>NTDB_id=451157 HRE60_RS02050 WP_181670971.1 399859..401664(+) (pepF) [Streptococcus salivarius strain DB-B5]
MSDNRAHLEEKYTWDLTTIFATDADWETEYESTVQDLKKASAYAGHLLDSAKNLLEATELYMSLMRRLEKIYVYASMKND
QDTTVGLYQEYQAKASNLYSQLSEAFAYFEPEFMALDDKKLAGFKEQEPGLGLYDHYFERLLANKDHVLSQEAEELLAAA
GDIFNGPTDTFNVLDNADILFPWVSDGQGDVVELTHGNFITLMESKDRDIRKGAYEAMYGTYEQFQHTYAQTLQGVVKVH
NYQAKVRHYNSTRHAALAANFIPESVYDSLLESVNKHLPLLHRYLDLRKKVLGLDELKMYDVYTPLSETETALTYEESLK
KAEEVLAIFGEEYSKGVHAAFTERWIDVHPNKGKRSGAYSGGAYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTRQT
QPYVYGDYPIFLAEIASTTNENILTETLLKEVKDDKTRFAILNHYLDGFKGTVFRQTQFAEFEHAIHEADASGQILTADF
MNKLYADLNEKYYNLKAEDNYEIQFEWERIPHFYMNYYVYQYATGFAAASYLAEKIVHGTEEDKEAYLTYLKAGSSDYPL
EVIKKAGVDMTNTDYLDAAFKVFEDRLVELEALVEKGVHLS

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=451157 HRE60_RS02050 WP_181670971.1 399859..401664(+) (pepF) [Streptococcus salivarius strain DB-B5]
ATGTCAGACAATCGTGCTCATTTAGAAGAGAAATACACATGGGATTTGACGACCATTTTTGCGACAGATGCAGATTGGGA
GACTGAATATGAAAGCACTGTTCAGGATTTGAAGAAGGCTAGTGCTTATGCAGGTCATCTTTTAGATTCTGCTAAGAACT
TGCTTGAGGCAACTGAACTTTATATGAGCCTTATGCGTCGCTTGGAGAAAATCTATGTCTATGCGTCAATGAAAAATGAC
CAAGACACAACAGTAGGGCTTTACCAAGAGTACCAAGCTAAGGCCTCAAACCTTTACTCACAGTTGAGTGAAGCCTTTGC
TTACTTTGAGCCTGAATTTATGGCCTTGGATGATAAGAAATTAGCTGGATTTAAAGAACAAGAGCCAGGTCTTGGACTTT
ATGACCACTATTTCGAACGTCTTTTGGCAAACAAGGACCATGTTCTTTCTCAAGAAGCTGAGGAGCTCTTGGCGGCAGCC
GGTGATATTTTCAACGGTCCAACGGATACCTTCAATGTCTTGGATAATGCTGATATCCTCTTCCCATGGGTATCAGATGG
TCAAGGGGATGTGGTTGAGTTGACACATGGTAACTTTATCACCCTCATGGAATCTAAGGACCGTGACATTCGTAAGGGAG
CTTATGAAGCGATGTATGGGACCTACGAGCAGTTCCAACATACTTATGCACAAACACTCCAAGGCGTTGTCAAGGTTCAC
AATTACCAAGCCAAAGTTCGTCACTATAATTCAACACGTCATGCAGCACTTGCGGCTAACTTTATTCCAGAAAGTGTTTA
TGACTCACTCTTGGAATCAGTGAACAAGCATTTGCCACTTTTGCACCGTTACCTTGATTTGCGTAAGAAGGTCTTGGGAC
TTGACGAGCTTAAGATGTATGACGTCTATACACCACTTTCTGAGACTGAAACTGCTCTTACTTATGAAGAATCCCTCAAG
AAAGCAGAAGAAGTCTTGGCAATCTTTGGTGAAGAGTATAGTAAAGGGGTTCATGCAGCTTTTACGGAACGTTGGATTGA
CGTTCACCCTAACAAAGGCAAACGTTCAGGGGCCTATTCAGGTGGGGCTTATGATACCAATGCCTTCATGCTTTTGAACT
GGCAAGACACTTTGGATAATCTCTTTACCTTGGTTCACGAGACTGGCCACAGTTTGCATTCAACGTTCACACGTCAGACT
CAACCATATGTTTACGGAGATTACCCAATCTTCTTGGCAGAAATTGCGTCTACAACCAATGAAAATATCTTGACAGAAAC
GCTTCTTAAAGAGGTTAAAGATGACAAGACACGTTTTGCTATTCTTAACCACTATTTGGATGGTTTCAAGGGAACTGTCT
TCCGTCAAACACAATTTGCCGAGTTTGAACATGCTATCCATGAGGCAGATGCATCTGGTCAAATCTTGACAGCGGACTTC
ATGAATAAGCTTTACGCAGACCTCAATGAGAAATACTATAACCTCAAAGCTGAAGATAACTACGAAATTCAGTTTGAGTG
GGAACGTATTCCGCATTTCTACATGAATTACTATGTCTACCAATACGCTACAGGATTTGCTGCAGCAAGCTACTTGGCTG
AAAAAATTGTTCATGGTACCGAAGAAGATAAAGAAGCTTACCTTACTTACCTTAAGGCGGGAAGCTCAGACTATCCTTTG
GAAGTTATCAAGAAAGCTGGTGTTGATATGACCAATACCGACTACTTGGATGCTGCCTTCAAAGTTTTTGAAGACCGTCT
TGTTGAATTGGAAGCCTTGGTTGAAAAAGGTGTTCACCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6WI38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

99.334

100

0.993