Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQN60_RS09960 Genome accession   NZ_CP054143
Coordinates   2128823..2130178 (+) Length   451 a.a.
NCBI ID   WP_173533495.1    Uniprot ID   A0A6M8SNZ1
Organism   Deefgea piscis strain D17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2123823..2135178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN60_RS09945 (HQN60_09945) flgJ 2124403..2125344 (+) 942 WP_173533492.1 flagellar assembly peptidoglycan hydrolase FlgJ -
  HQN60_RS09950 (HQN60_09950) flgK 2125375..2127396 (+) 2022 WP_173533493.1 flagellar hook-associated protein FlgK -
  HQN60_RS09955 (HQN60_09955) flgL 2127421..2128764 (+) 1344 WP_173533494.1 flagellar hook-associated protein FlgL -
  HQN60_RS09960 (HQN60_09960) radA 2128823..2130178 (+) 1356 WP_173533495.1 DNA repair protein RadA Machinery gene
  HQN60_RS09965 (HQN60_09965) trxA 2130289..2130615 (+) 327 WP_173533496.1 thioredoxin TrxA -
  HQN60_RS09970 (HQN60_09970) rho 2130746..2132002 (+) 1257 WP_173533497.1 transcription termination factor Rho -
  HQN60_RS09975 (HQN60_09975) rpmE 2132092..2132301 (+) 210 WP_173533498.1 50S ribosomal protein L31 -
  HQN60_RS09980 (HQN60_09980) - 2132395..2134020 (+) 1626 WP_173533499.1 glycosyltransferase family 39 protein -
  HQN60_RS09985 (HQN60_09985) - 2134107..2134271 (-) 165 WP_173533500.1 DUF3149 domain-containing protein -
  HQN60_RS09990 (HQN60_09990) - 2134403..2134897 (-) 495 WP_173533501.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48186.84 Da        Isoelectric Point: 7.7238

>NTDB_id=451119 HQN60_RS09960 WP_173533495.1 2128823..2130178(+) (radA) [Deefgea piscis strain D17]
MSKVKTTFVCRVCGGTSPKWQGQCPQCGDWNTLEESVVENKAATGRFQSLAADGAIKNLSEVNAEEVPRIPTQMEELDRV
LGGGLVPGGVVLIGGDPGIGKSTLLLQALAKLSETQAVLYVSGEESAQQIALRARRLGVPTAKVRLYPEISLEKILLALT
AEIPKVVVIDSIQTMFTEALTSAPGSVAQVRECSSQLTRFAKRHGTSVLLVGHVTKDGAIAGPRVLEHIVDAVLYFEGDT
HSSFRLIRAIKNRFGAVNELGVFAMTDKGLREVSNPSAMFLSQHAEPVAGSCVMVTQEGTRPMLVEVQALVDDAHSPQVK
RLAVGVEQNRLALLLAVLHRHAGIVAFDQDVFINAVGGVRISEPAADLAMLLAIVSSLKNKPLPAKMVVFGEVGLAGEVR
PVQRGQERLKEAAKLGFTHAIVPKANRPRQPIDGMTVISVERLDEAVAAAF

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=451119 HQN60_RS09960 WP_173533495.1 2128823..2130178(+) (radA) [Deefgea piscis strain D17]
ATGAGTAAAGTAAAAACGACTTTTGTTTGCCGAGTGTGTGGCGGTACATCTCCCAAATGGCAGGGGCAATGCCCGCAATG
TGGCGATTGGAATACGCTAGAAGAAAGTGTGGTTGAAAATAAAGCCGCCACAGGGCGTTTTCAATCATTGGCTGCCGATG
GCGCAATTAAAAATCTTTCGGAAGTGAATGCCGAAGAGGTGCCGCGCATTCCAACACAAATGGAAGAGCTCGATCGTGTG
TTGGGCGGCGGCTTGGTGCCCGGTGGTGTGGTATTGATTGGCGGCGATCCGGGTATTGGTAAGTCAACTCTGTTATTGCA
AGCTTTAGCCAAGCTCTCGGAAACTCAGGCCGTTTTGTATGTCAGCGGTGAGGAATCAGCACAGCAAATTGCTTTAAGGG
CGCGTCGATTAGGAGTGCCAACGGCAAAGGTACGGCTTTATCCTGAGATCAGTTTGGAAAAAATATTATTAGCCCTGACT
GCCGAAATCCCTAAAGTTGTGGTGATTGATTCGATTCAAACCATGTTCACTGAAGCATTGACGAGTGCGCCAGGTAGTGT
GGCGCAAGTCAGAGAATGTTCATCGCAGTTGACTCGTTTTGCCAAGCGGCATGGGACGTCAGTGCTCTTGGTTGGTCATG
TAACCAAAGATGGTGCCATTGCTGGCCCACGCGTGCTTGAGCATATTGTCGATGCAGTGCTGTATTTTGAGGGTGATACC
CATTCTAGTTTTCGTTTGATTCGAGCCATTAAAAACCGATTTGGCGCAGTCAATGAATTGGGTGTTTTTGCGATGACCGA
TAAAGGTTTGCGCGAAGTCTCTAATCCATCGGCGATGTTTTTAAGTCAACACGCTGAACCTGTCGCTGGATCTTGTGTCA
TGGTGACACAAGAAGGAACTCGGCCGATGCTGGTGGAGGTGCAGGCTTTGGTGGATGATGCGCATTCACCGCAGGTAAAG
CGTTTGGCTGTTGGCGTAGAGCAAAATCGATTGGCTTTATTGCTGGCTGTATTGCATCGCCACGCTGGTATTGTCGCCTT
TGATCAAGATGTGTTTATTAATGCCGTTGGTGGGGTACGGATTTCAGAGCCTGCTGCCGATTTAGCAATGTTGCTCGCGA
TTGTCTCGTCGTTAAAAAATAAACCCTTGCCTGCAAAGATGGTTGTTTTTGGAGAAGTTGGCTTGGCAGGTGAGGTGCGT
CCCGTGCAGCGCGGTCAGGAGCGCCTTAAAGAGGCCGCTAAATTGGGGTTTACCCATGCGATTGTGCCGAAAGCCAATCG
ACCTCGGCAGCCCATCGACGGTATGACTGTGATTTCTGTTGAGCGTTTGGATGAGGCAGTTGCTGCTGCTTTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(359-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8SNZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.391

100

0.483
  radA Streptococcus pneumoniae Rx1

47.265

100

0.479
  radA Streptococcus pneumoniae D39

47.265

100

0.479
  radA Streptococcus mitis SK321

47.265

100

0.479
  radA Streptococcus pneumoniae R6

47.265

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.265

100

0.479
  radA Streptococcus mitis NCTC 12261

47.566

100

0.477