Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   I6G27_RS09285 Genome accession   NZ_CP065751
Coordinates   2094757..2096154 (-) Length   465 a.a.
NCBI ID   WP_062334441.1    Uniprot ID   A0A378QAA3
Organism   Moraxella osloensis strain FDAARGOS_870     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2089757..2101154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G27_RS09255 (I6G27_09255) - 2089959..2090093 (+) 135 Protein_1804 ABC transporter substrate-binding protein -
  I6G27_RS09260 (I6G27_09260) - 2090192..2090713 (-) 522 WP_062334450.1 hypothetical protein -
  I6G27_RS09265 (I6G27_09265) - 2091223..2092218 (+) 996 WP_406946764.1 ABC transporter substrate-binding protein -
  I6G27_RS09270 (I6G27_09270) - 2092399..2093304 (+) 906 WP_062334444.1 ABC transporter permease -
  I6G27_RS09275 (I6G27_09275) - 2093372..2094166 (+) 795 WP_036593505.1 ABC transporter ATP-binding protein -
  I6G27_RS09280 (I6G27_09280) - 2094366..2094698 (+) 333 WP_007116343.1 hypothetical protein -
  I6G27_RS09285 (I6G27_09285) radA/sms 2094757..2096154 (-) 1398 WP_062334441.1 DNA repair protein RadA Machinery gene
  I6G27_RS09290 (I6G27_09290) - 2096372..2096806 (-) 435 WP_062334438.1 PACE efflux transporter -
  I6G27_RS09295 (I6G27_09295) lptB 2096844..2097587 (-) 744 WP_062334435.1 LPS export ABC transporter ATP-binding protein -
  I6G27_RS09300 (I6G27_09300) lptA 2097645..2098154 (-) 510 WP_115304596.1 lipopolysaccharide transport periplasmic protein LptA -
  I6G27_RS09305 (I6G27_09305) lptC 2098338..2098910 (-) 573 WP_062334964.1 LPS export ABC transporter periplasmic protein LptC -
  I6G27_RS09310 (I6G27_09310) - 2099089..2099613 (-) 525 WP_062334430.1 HAD family hydrolase -
  I6G27_RS09315 (I6G27_09315) - 2099671..2100639 (-) 969 WP_082741467.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49666.21 Da        Isoelectric Point: 7.1730

>NTDB_id=451114 I6G27_RS09285 WP_062334441.1 2094757..2096154(-) (radA/sms) [Moraxella osloensis strain FDAARGOS_870]
MAKSKLSYVCQQCGANFGKWSGQCAECGAWNSLVEAPTVSMPHHKPVTKKASNYAGEQSSVMPLNAVPMSLDTRLPTGVG
EFDRVLGGGLVAGSVVLIGGDPGIGKSTILLQTAIHMAENQSLAGSALYITGEESLSQVAMRASRLGLPNNNLKVLAETN
VEMICQALTQEQPAVAIIDSIQTLFTEVIQSAPGGVSQIRESAAILTRYAKQTGTALFLVGHVTKEGALAGPRVLEHMVD
AVLYFEGQSDSRFRMIRAVKNRFGAVNELGIFAMTDTGLKEVANPSAIFLSRYDKPIAGSVVMVSREGTRPLLVEVQALV
DESQGQPRRMALGLDYQRLAMLLAVMHRHGGIQTNGQDVYVNVVGGVKVLETGSDLAVLLACASSIKEKPLPYTLAVFGE
VGLSGEIRPVPNGQERLKEAVKHGFTHAIVPKANAPKTQLEQYQGLKIIAVERLDDAIDSAFNYL

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=451114 I6G27_RS09285 WP_062334441.1 2094757..2096154(-) (radA/sms) [Moraxella osloensis strain FDAARGOS_870]
ATGGCAAAATCAAAATTATCCTATGTGTGCCAGCAATGTGGCGCAAACTTCGGTAAATGGTCGGGACAGTGTGCCGAATG
TGGCGCCTGGAATAGCCTTGTCGAAGCGCCGACAGTCAGCATGCCACATCATAAACCCGTCACCAAAAAAGCCAGCAACT
ACGCGGGCGAACAATCGAGCGTCATGCCACTTAATGCCGTGCCCATGTCACTCGATACTAGGCTACCAACGGGTGTTGGT
GAGTTTGATAGGGTGTTGGGCGGTGGCTTAGTGGCAGGTTCTGTGGTGCTGATTGGGGGTGATCCGGGTATTGGCAAATC
TACTATCTTGCTACAGACGGCGATTCATATGGCAGAAAACCAAAGCCTCGCCGGCAGTGCGCTGTACATTACCGGTGAAG
AATCGTTGTCACAGGTGGCGATGCGGGCTAGTCGTTTGGGGCTACCCAATAACAACTTAAAAGTATTGGCAGAAACCAAT
GTTGAAATGATCTGCCAAGCCTTGACCCAAGAGCAACCAGCCGTCGCCATCATTGACTCAATTCAGACTTTGTTTACCGA
AGTCATCCAATCCGCGCCAGGTGGTGTCAGTCAAATTCGTGAATCAGCGGCGATTCTGACGCGCTATGCTAAGCAAACGG
GTACCGCGTTATTTTTGGTCGGACATGTGACCAAAGAAGGGGCGCTGGCAGGCCCTCGCGTGCTAGAACATATGGTGGAT
GCGGTACTGTATTTTGAAGGGCAGTCGGACAGCCGTTTTCGAATGATTCGTGCGGTGAAAAATCGTTTTGGTGCCGTCAA
CGAGCTGGGGATTTTTGCCATGACGGATACAGGACTCAAAGAAGTGGCAAATCCATCGGCGATATTTTTAAGTCGCTATG
ATAAACCGATTGCAGGCTCAGTGGTCATGGTTAGCCGTGAAGGTACCAGACCGCTACTGGTTGAAGTACAAGCGCTGGTC
GATGAATCGCAAGGACAACCTAGGCGCATGGCATTAGGTTTAGATTATCAGCGCTTAGCCATGTTGCTGGCAGTCATGCA
CCGTCATGGCGGTATCCAAACCAATGGGCAAGATGTGTATGTCAATGTGGTAGGCGGGGTCAAGGTACTTGAAACCGGCT
CAGATTTGGCGGTGTTATTAGCCTGTGCCTCTAGTATTAAAGAAAAGCCTTTGCCTTATACTCTAGCAGTATTTGGTGAA
GTGGGCTTATCGGGTGAAATCAGACCTGTGCCCAATGGTCAAGAACGTCTAAAAGAAGCGGTGAAACATGGCTTTACTCA
TGCAATTGTACCCAAAGCCAATGCCCCCAAAACGCAATTAGAGCAATATCAAGGTCTCAAAATCATTGCAGTTGAGCGAT
TAGATGATGCGATTGATAGCGCCTTTAATTATCTATAA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(376-462)

AAA domain (AAA_25)

(86-227)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378QAA3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.097

100

0.471
  radA Streptococcus pneumoniae Rx1

45.356

99.57

0.452
  radA Streptococcus pneumoniae D39

45.356

99.57

0.452
  radA Streptococcus pneumoniae R6

45.356

99.57

0.452
  radA Streptococcus pneumoniae TIGR4

45.356

99.57

0.452
  radA Streptococcus mitis NCTC 12261

45.356

99.57

0.452
  radA Streptococcus mitis SK321

45.356

99.57

0.452