Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | HQN60_RS07075 | Genome accession | NZ_CP054143 |
| Coordinates | 1468352..1469584 (+) | Length | 410 a.a. |
| NCBI ID | WP_173532983.1 | Uniprot ID | A0A6M8SUU3 |
| Organism | Deefgea piscis strain D17 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1463352..1474584
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQN60_RS07050 (HQN60_07050) | - | 1464043..1464450 (+) | 408 | WP_173532978.1 | hypothetical protein | - |
| HQN60_RS07055 (HQN60_07055) | ahcY | 1464645..1466060 (+) | 1416 | WP_173532979.1 | adenosylhomocysteinase | - |
| HQN60_RS07060 (HQN60_07060) | - | 1466117..1467202 (-) | 1086 | WP_173532980.1 | hypothetical protein | - |
| HQN60_RS07065 (HQN60_07065) | - | 1467373..1467624 (-) | 252 | WP_173532981.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| HQN60_RS07070 (HQN60_07070) | rsmD | 1467730..1468284 (-) | 555 | WP_173532982.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| HQN60_RS07075 (HQN60_07075) | pilA | 1468352..1469584 (+) | 1233 | WP_173532983.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| HQN60_RS07080 (HQN60_07080) | ftsE | 1469792..1470445 (+) | 654 | WP_173532984.1 | cell division ATP-binding protein FtsE | - |
| HQN60_RS07085 (HQN60_07085) | ftsX | 1470475..1471377 (+) | 903 | WP_173532985.1 | permease-like cell division protein FtsX | - |
| HQN60_RS07090 (HQN60_07090) | rpoH | 1471567..1472412 (+) | 846 | WP_254456694.1 | RNA polymerase sigma factor RpoH | - |
| HQN60_RS07095 (HQN60_07095) | - | 1473048..1473428 (+) | 381 | WP_247646478.1 | division/cell wall cluster transcriptional repressor MraZ | - |
| HQN60_RS07100 (HQN60_07100) | rsmH | 1473434..1474375 (+) | 942 | WP_217390349.1 | 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH | - |
Sequence
Protein
Download Length: 410 a.a. Molecular weight: 43675.58 Da Isoelectric Point: 4.8665
>NTDB_id=451114 HQN60_RS07075 WP_173532983.1 1468352..1469584(+) (pilA) [Deefgea piscis strain D17]
MFSFFKKKKPPEAQIVAEIAPETPVTVIETEPLAPVAIAETPVIAEPIAKIEPIEPVEPVAAAIEIKPAPVAPLESAIEP
LIAQEAEPVAHADAFVPPADLAQPQERPKLSWTERLKMGLAKTRDKLGKSLASIFGGGQIDDELYEELETVLLTADMGVD
ATQHLLKDVRERVSLRGLKDSGELKDALKLSLTDLIKPLEIPLDVSGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQNLS
VLLAAGDTFRAAAREQLVVWGERNGVQVIAQASGDAAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVV
QKADPTGPHEVLLVLDANTGQNALAQVKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGESIDDLRPFV
AKDYIDALFE
MFSFFKKKKPPEAQIVAEIAPETPVTVIETEPLAPVAIAETPVIAEPIAKIEPIEPVEPVAAAIEIKPAPVAPLESAIEP
LIAQEAEPVAHADAFVPPADLAQPQERPKLSWTERLKMGLAKTRDKLGKSLASIFGGGQIDDELYEELETVLLTADMGVD
ATQHLLKDVRERVSLRGLKDSGELKDALKLSLTDLIKPLEIPLDVSGHKPFILMVAGVNGAGKTTSIGKLAKYFQSQNLS
VLLAAGDTFRAAAREQLVVWGERNGVQVIAQASGDAAAVAFDAVNAAKARGIDVVIVDTAGRLPTQLHLMEEIKKVKRVV
QKADPTGPHEVLLVLDANTGQNALAQVKSFDDALGLTGLVLTKLDGTAKGGVIAAIAKNRPVPLRFIGVGESIDDLRPFV
AKDYIDALFE
Nucleotide
Download Length: 1233 bp
>NTDB_id=451114 HQN60_RS07075 WP_173532983.1 1468352..1469584(+) (pilA) [Deefgea piscis strain D17]
ATGTTTAGTTTTTTTAAGAAAAAGAAGCCGCCAGAGGCGCAAATTGTCGCAGAAATTGCGCCAGAAACCCCAGTTACGGT
GATTGAAACTGAGCCGCTCGCTCCAGTCGCTATCGCTGAAACCCCCGTCATCGCTGAACCGATCGCAAAAATTGAACCGA
TTGAGCCAGTTGAGCCAGTTGCTGCTGCAATTGAGATTAAGCCCGCACCCGTTGCGCCGCTTGAGTCAGCGATTGAACCT
TTGATTGCCCAAGAAGCTGAGCCTGTAGCGCATGCCGATGCGTTTGTACCGCCCGCCGATTTAGCTCAGCCACAAGAACG
TCCTAAATTATCTTGGACTGAACGCTTAAAAATGGGTTTGGCAAAAACTCGCGATAAATTAGGCAAAAGCTTAGCCAGTA
TTTTTGGTGGTGGCCAAATTGATGACGAGCTTTACGAAGAGCTAGAAACCGTATTGTTGACCGCCGATATGGGCGTCGAT
GCGACTCAGCATTTATTAAAAGACGTTCGAGAGCGCGTGTCACTGCGTGGTTTAAAAGACTCGGGTGAACTTAAAGACGC
GCTGAAACTTAGCCTGACTGATTTGATTAAACCGCTAGAAATCCCGCTGGATGTATCGGGCCACAAGCCATTTATTTTGA
TGGTGGCTGGCGTGAACGGCGCAGGTAAAACCACCAGCATCGGTAAGTTAGCCAAATATTTTCAATCGCAAAATTTATCG
GTGTTGTTAGCGGCTGGGGATACATTCCGCGCTGCGGCACGTGAGCAATTGGTCGTTTGGGGCGAGCGCAACGGCGTGCA
AGTGATTGCACAAGCGTCGGGCGATGCCGCCGCGGTGGCGTTTGATGCGGTCAACGCCGCTAAAGCGCGTGGTATTGATG
TGGTGATTGTCGATACCGCAGGGCGTTTACCAACGCAATTGCACCTGATGGAAGAAATCAAAAAAGTAAAACGCGTGGTG
CAAAAAGCAGATCCAACTGGGCCACATGAAGTATTGCTGGTGCTGGACGCCAATACGGGGCAAAACGCTTTGGCACAAGT
TAAATCGTTTGACGACGCTTTGGGTTTGACCGGTTTAGTGCTGACTAAGCTTGATGGCACCGCCAAGGGTGGCGTCATTG
CGGCGATTGCTAAAAACCGCCCCGTACCGCTGCGCTTTATCGGTGTGGGTGAATCGATTGATGATTTACGCCCATTTGTG
GCAAAAGATTATATCGATGCCTTGTTTGAATAA
ATGTTTAGTTTTTTTAAGAAAAAGAAGCCGCCAGAGGCGCAAATTGTCGCAGAAATTGCGCCAGAAACCCCAGTTACGGT
GATTGAAACTGAGCCGCTCGCTCCAGTCGCTATCGCTGAAACCCCCGTCATCGCTGAACCGATCGCAAAAATTGAACCGA
TTGAGCCAGTTGAGCCAGTTGCTGCTGCAATTGAGATTAAGCCCGCACCCGTTGCGCCGCTTGAGTCAGCGATTGAACCT
TTGATTGCCCAAGAAGCTGAGCCTGTAGCGCATGCCGATGCGTTTGTACCGCCCGCCGATTTAGCTCAGCCACAAGAACG
TCCTAAATTATCTTGGACTGAACGCTTAAAAATGGGTTTGGCAAAAACTCGCGATAAATTAGGCAAAAGCTTAGCCAGTA
TTTTTGGTGGTGGCCAAATTGATGACGAGCTTTACGAAGAGCTAGAAACCGTATTGTTGACCGCCGATATGGGCGTCGAT
GCGACTCAGCATTTATTAAAAGACGTTCGAGAGCGCGTGTCACTGCGTGGTTTAAAAGACTCGGGTGAACTTAAAGACGC
GCTGAAACTTAGCCTGACTGATTTGATTAAACCGCTAGAAATCCCGCTGGATGTATCGGGCCACAAGCCATTTATTTTGA
TGGTGGCTGGCGTGAACGGCGCAGGTAAAACCACCAGCATCGGTAAGTTAGCCAAATATTTTCAATCGCAAAATTTATCG
GTGTTGTTAGCGGCTGGGGATACATTCCGCGCTGCGGCACGTGAGCAATTGGTCGTTTGGGGCGAGCGCAACGGCGTGCA
AGTGATTGCACAAGCGTCGGGCGATGCCGCCGCGGTGGCGTTTGATGCGGTCAACGCCGCTAAAGCGCGTGGTATTGATG
TGGTGATTGTCGATACCGCAGGGCGTTTACCAACGCAATTGCACCTGATGGAAGAAATCAAAAAAGTAAAACGCGTGGTG
CAAAAAGCAGATCCAACTGGGCCACATGAAGTATTGCTGGTGCTGGACGCCAATACGGGGCAAAACGCTTTGGCACAAGT
TAAATCGTTTGACGACGCTTTGGGTTTGACCGGTTTAGTGCTGACTAAGCTTGATGGCACCGCCAAGGGTGGCGTCATTG
CGGCGATTGCTAAAAACCGCCCCGTACCGCTGCGCTTTATCGGTGTGGGTGAATCGATTGATGATTTACGCCCATTTGTG
GCAAAAGATTATATCGATGCCTTGTTTGAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
59.569 |
100 |
0.607 |