Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQN62_RS03025 Genome accession   NZ_CP054141
Coordinates   733185..734546 (-) Length   453 a.a.
NCBI ID   WP_116796463.1    Uniprot ID   -
Organism   Flavobacterium sp. M31R6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 728185..739546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN62_RS03010 (HQN62_03010) - 728447..730264 (+) 1818 WP_116796466.1 histidine kinase -
  HQN62_RS03015 (HQN62_03015) - 730261..731007 (+) 747 WP_116796465.1 LytTR family DNA-binding domain-containing protein -
  HQN62_RS03020 (HQN62_03020) - 731184..733145 (-) 1962 WP_173503272.1 transglycosylase domain-containing protein -
  HQN62_RS03025 (HQN62_03025) radA 733185..734546 (-) 1362 WP_116796463.1 DNA repair protein RadA Machinery gene
  HQN62_RS03030 (HQN62_03030) - 734549..735805 (-) 1257 WP_173503273.1 alpha/beta hydrolase -
  HQN62_RS03035 (HQN62_03035) panD 735896..736246 (-) 351 WP_077378752.1 aspartate 1-decarboxylase -
  HQN62_RS03040 (HQN62_03040) panC 736256..737104 (-) 849 WP_173503274.1 pantoate--beta-alanine ligase -
  HQN62_RS03045 (HQN62_03045) - 737212..738018 (+) 807 WP_116796460.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49878.26 Da        Isoelectric Point: 6.0986

>NTDB_id=451090 HQN62_RS03025 WP_116796463.1 733185..734546(-) (radA) [Flavobacterium sp. M31R6]
MTKVKTTFFCQNCGAQYARWQGQCNSCKEWNTIAEEIIQKQEKVAWKSESSTTSKAPKPLRINEIDSAEEIRLDTTDNEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNGDNCYILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIQLVAKIEDVASQLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=451090 HQN62_RS03025 WP_116796463.1 733185..734546(-) (radA) [Flavobacterium sp. M31R6]
ATGACCAAAGTAAAAACAACTTTTTTTTGCCAGAATTGTGGTGCGCAATATGCCAGATGGCAAGGACAGTGCAATTCCTG
TAAAGAATGGAATACTATTGCCGAGGAAATTATACAAAAGCAGGAAAAAGTAGCTTGGAAAAGTGAATCATCTACCACTA
GTAAAGCACCAAAACCGTTACGAATCAACGAAATTGACAGTGCAGAAGAAATTCGTCTCGATACTACCGATAACGAATTG
AATAGAGTTCTGGGTGGAGGAATCGTTCCTGGATCTCTTATCCTTCTGGGAGGTGAGCCTGGAATTGGAAAGAGTACACT
TTTATTGCAAATTTCCTTAAAATTACCTTACAAAACTTTATACGTTTCTGGCGAAGAAAGCCAAAAACAAATAAAAATGC
GTGCCGAACGTATCACTCCAAACGGAGATAATTGCTACATTCTTACCGAAACAAAAACACAGAATATCTTCAAACAGATT
GAAGCCATTCAGCCCGAAATTGTCATAATCGATTCGATTCAAACTTTGCATACCGATTATATTGAATCTACTGCAGGAAG
TATTTCACAAATACGAGAAACAACTGCAGAACTTATCAAATTTGCCAAAGAAACCAATATTCCAGTAATCTTAATTGGAC
ATATTACTAAAGACGGAACTATAGCAGGTCCAAAAATATTGGAACATATGGTCGATACGGTGCTTCAATTTGAAGGAGAC
CGCAACCATGTCTATCGTATTTTGCGTTCGCTGAAAAACCGTTTTGGATCAACTGCCGAAATTGGGATTTATGAGATGCT
AGGCAGCGGATTGCGAGAAGTATCAAATCCATCCGAAATATTGATTTCTCACAAAGACGAAGAATTGTCAGGAACGGCCA
TTGCAACTACACTCGAGGGCATGAGACCTTTGATGATTGAAATACAATCGTTGGTAAGTACCGCAGTTTACGGAACACCG
CAAAGAAGCACTACAGGTTATAACGCCAAAAGACTAAACATGATTTTAGCCGTTTTGGAAAAAAGAGCTGGCTTTAGGCT
TGGTGCCAAAGACGTTTTCTTGAATGTAACCGGCGGAATCTCCGTAGACGATCCAGCCATAGATTTAGCTGTTGTGGCCG
CCATTTTATCATCAAATGAAGACATTCCAGTCAACAAAGATTTTTGTTTTGCTGGCGAAGTTGGGCTTTCGGGTGAAATT
CGTCCTGTCAACCGAGTGGATCAGCGTATTCAAGAAGCTGAAAAATTGGGATTTTCGACTATTTTTGTATCCAAATACAA
TAAAATCGCCTTAAAAAATACGGGAATAAAAATCCAATTGGTGGCCAAAATCGAAGATGTTGCCAGCCAGTTGTTCGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.342

100

0.497
  radA Streptococcus mitis NCTC 12261

49.342

100

0.497
  radA Streptococcus pneumoniae R6

51.054

94.26

0.481
  radA Streptococcus pneumoniae TIGR4

51.054

94.26

0.481
  radA Streptococcus pneumoniae D39

51.054

94.26

0.481
  radA Streptococcus pneumoniae Rx1

51.054

94.26

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481