Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HP555_RS00970 Genome accession   NZ_CP054140
Coordinates   220985..222352 (+) Length   455 a.a.
NCBI ID   WP_199263358.1    Uniprot ID   -
Organism   Desulfobulbus oligotrophicus strain Prop6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 215985..227352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP555_RS00950 (HP555_00950) pgl 216739..217482 (+) 744 WP_199263354.1 6-phosphogluconolactonase -
  HP555_RS00955 (HP555_00955) pyk 217515..218960 (-) 1446 WP_199263355.1 pyruvate kinase -
  HP555_RS00960 (HP555_00960) - 219214..220248 (-) 1035 WP_199263356.1 alpha-hydroxy-acid oxidizing protein -
  HP555_RS00965 (HP555_00965) - 220308..220724 (-) 417 WP_199263357.1 acyl-CoA thioesterase -
  HP555_RS00970 (HP555_00970) radA 220985..222352 (+) 1368 WP_199263358.1 DNA repair protein RadA Machinery gene
  HP555_RS00975 (HP555_00975) - 222441..222746 (-) 306 WP_199263359.1 hypothetical protein -
  HP555_RS00980 (HP555_00980) nrfD 222902..224026 (-) 1125 WP_199263360.1 NrfD/PsrC family molybdoenzyme membrane anchor subunit -
  HP555_RS00985 (HP555_00985) - 224004..224516 (-) 513 WP_199263361.1 HyaD/HybD family hydrogenase maturation endopeptidase -
  HP555_RS00990 (HP555_00990) - 224513..226213 (-) 1701 WP_199263362.1 nickel-dependent hydrogenase large subunit -
  HP555_RS00995 (HP555_00995) hybA 226283..227311 (-) 1029 WP_199263363.1 hydrogenase 2 operon protein HybA -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48846.35 Da        Isoelectric Point: 6.9608

>NTDB_id=451078 HP555_RS00970 WP_199263358.1 220985..222352(+) (radA) [Desulfobulbus oligotrophicus strain Prop6]
MQTAKKNSPFFVCGQCGLESRKWLGRCPDCGAWDSLTEHQQTQLSSAGRQTAIAQPLHMTTTEENTRLITGIGEMDRVLG
GGIVPGSLVLIGGDPGIGKSTLILQLLASLAAKNLQMLYVTGEESAAQIRMRAERLKISGHNISISTENSVEAIIDLAGR
MHPALMAVDSIQTMYSEEVGSAPGSVTQVREATARLLQLAKINHIPVLLVGHVTKDGAIAGPRVLEHMVDTVLYFEGDRG
QVFRILRTVKNRFGSTNEIGVFEMQDSGLIEVSNPSALFLAERPVNVSGSVVLPSVEGTRPILVEVQALVSRSSLGTARR
TAIGADPQRLALLTAVLEKKLGIALYDHDIFLNIAGGIRISEPALDLGVVAALLSSYLDKPIDANTVVCGEIGLAGEIRA
VGQMEQRVREAGRLGFQTFLMPESSARQLQSSKKEKMRVLAVRGVSELAEHLFTA

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=451078 HP555_RS00970 WP_199263358.1 220985..222352(+) (radA) [Desulfobulbus oligotrophicus strain Prop6]
ATGCAAACAGCCAAGAAAAACTCACCGTTCTTCGTATGCGGGCAGTGCGGGCTTGAAAGCCGTAAATGGCTGGGTCGCTG
CCCGGACTGCGGTGCCTGGGACAGCCTCACCGAACACCAACAGACACAGCTCTCTTCCGCCGGTCGTCAGACTGCTATAG
CCCAGCCTTTACACATGACGACCACTGAAGAGAACACCCGTCTGATCACAGGAATCGGCGAGATGGACAGGGTGCTTGGC
GGCGGCATTGTTCCCGGCTCCCTGGTCCTGATCGGCGGTGATCCCGGCATCGGCAAGTCGACCCTCATTCTCCAGCTGCT
GGCCTCACTGGCTGCCAAGAACCTGCAGATGCTGTACGTCACAGGTGAAGAGTCGGCAGCACAGATCCGGATGCGTGCCG
AACGTCTTAAAATTTCCGGACACAACATCTCCATCTCCACGGAGAACAGTGTGGAAGCGATTATTGATCTCGCCGGCCGG
ATGCACCCCGCGCTGATGGCGGTTGACTCCATTCAAACCATGTACAGTGAAGAGGTCGGATCAGCACCGGGCTCTGTCAC
CCAGGTGCGTGAAGCAACCGCCCGGTTGCTGCAACTGGCCAAAATCAATCACATACCCGTTCTGCTGGTCGGGCACGTGA
CAAAAGACGGTGCCATTGCCGGTCCGCGGGTCCTGGAGCATATGGTTGATACGGTCCTCTACTTCGAGGGTGATCGCGGC
CAGGTGTTTCGTATTCTCCGCACCGTGAAAAATCGGTTCGGCTCAACCAATGAGATCGGCGTCTTTGAGATGCAGGACAG
CGGTCTGATCGAGGTGAGCAATCCTTCGGCACTTTTTCTTGCCGAACGACCAGTCAATGTCTCCGGTTCTGTTGTGCTGC
CCAGTGTTGAGGGAACCCGTCCCATCCTGGTCGAAGTTCAGGCCCTGGTCAGCCGCTCCAGTCTGGGCACTGCCAGAAGA
ACAGCCATTGGCGCTGATCCGCAGCGGTTAGCCCTGCTCACAGCTGTACTGGAAAAAAAACTGGGCATCGCGCTCTACGA
CCACGATATTTTCCTGAACATTGCCGGTGGTATCCGGATCAGCGAACCGGCTCTTGACCTTGGAGTGGTTGCGGCACTGC
TGTCCAGCTATCTTGACAAACCTATTGACGCTAATACGGTGGTCTGTGGTGAAATCGGTCTGGCCGGGGAAATACGGGCC
GTGGGGCAGATGGAGCAGCGGGTGCGGGAAGCCGGACGATTGGGTTTCCAGACCTTTCTCATGCCGGAGTCATCCGCACG
TCAACTGCAAAGCAGCAAGAAAGAGAAGATGAGAGTACTCGCGGTCCGCGGGGTCTCAGAGCTGGCTGAACATCTGTTCA
CTGCCTGA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(70-145)

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(11-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.891

100

0.503
  radA Streptococcus mitis NCTC 12261

49.561

100

0.497
  radA Streptococcus pneumoniae Rx1

49.561

100

0.497
  radA Streptococcus pneumoniae D39

49.561

100

0.497
  radA Streptococcus pneumoniae R6

49.561

100

0.497
  radA Streptococcus pneumoniae TIGR4

49.561

100

0.497
  radA Streptococcus mitis SK321

49.342

100

0.495