Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HQ865_RS24560 Genome accession   NZ_CP054139
Coordinates   5778276..5779730 (-) Length   484 a.a.
NCBI ID   WP_173417440.1    Uniprot ID   A0A7D4TSG7
Organism   Mucilaginibacter mali strain G2-14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5773276..5784730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ865_RS24540 (HQ865_24540) - 5774444..5774626 (-) 183 WP_173417436.1 DUF5808 domain-containing protein -
  HQ865_RS24545 (HQ865_24545) pfkA 5775019..5775996 (+) 978 WP_173417437.1 6-phosphofructokinase -
  HQ865_RS24550 (HQ865_24550) - 5776005..5776451 (-) 447 WP_173417438.1 DUF4920 domain-containing protein -
  HQ865_RS24555 (HQ865_24555) - 5776607..5777998 (+) 1392 WP_173417439.1 NHL repeat-containing protein -
  HQ865_RS24560 (HQ865_24560) radA 5778276..5779730 (-) 1455 WP_173417440.1 DNA repair protein RadA Machinery gene
  HQ865_RS24565 (HQ865_24565) - 5780190..5781452 (-) 1263 WP_237073579.1 alpha-1,2-mannosidase -
  HQ865_RS24570 (HQ865_24570) - 5781523..5782062 (-) 540 WP_173417441.1 hypothetical protein -
  HQ865_RS25890 - 5782316..5783161 (+) 846 WP_202020427.1 hypothetical protein -
  HQ865_RS25895 - 5783082..5783693 (+) 612 WP_202020428.1 DNA/RNA non-specific endonuclease -
  HQ865_RS24580 (HQ865_24580) - 5783771..5783923 (+) 153 WP_173417442.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52777.57 Da        Isoelectric Point: 5.9328

>NTDB_id=451075 HQ865_RS24560 WP_173417440.1 5778276..5779730(-) (radA) [Mucilaginibacter mali strain G2-14]
MAKTKVSYFCQSCGFEAPKWLGKCPSCSQWNTFVEEIVERANPSVPDWKPQSTSLQRANKAVPIDKIEFDEEHRILTPDK
EFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLSLNMPGLRVLYVSGEESDRQIKMRAERLAPQPPEGGAGSQATPPLGG
GGAGGDCYILTETSTQNIFKQIEQLQPELVVIDSIQTLHSAHIESTPGSVSQVRECTAELLRFAKESGTPVFLIGHITKD
GMIAGPKILEHMVDTVLQFEGDRHHVYRILRAVKNRFGSASELGIYEMLGAGLREVSNPSEILLSQREEQLSGITISATL
EGMRPMMIETQALVSTSAYGTPQRSATGFDTRRMNMLLAVLEKRCGFKLGAKDVFLNITGGIRVEDPAIDLGLAAAIISS
HEDIPIPFKTCFAGELGLSGEIRAVNRVEQRIAEAQKLGFEQIFISKYNLPTGGNDKKRIDLSRYEIAVKTVGSIEEVFT
LLFG

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=451075 HQ865_RS24560 WP_173417440.1 5778276..5779730(-) (radA) [Mucilaginibacter mali strain G2-14]
TTGGCAAAAACTAAAGTATCGTACTTCTGTCAAAGCTGCGGCTTCGAGGCACCAAAATGGCTGGGCAAATGCCCCTCCTG
CAGCCAGTGGAATACCTTTGTTGAAGAAATTGTAGAACGGGCAAACCCATCAGTACCCGACTGGAAGCCACAGTCTACCT
CGCTACAGCGTGCAAATAAGGCTGTGCCTATTGATAAAATAGAATTTGATGAGGAACACCGCATCCTCACGCCCGATAAA
GAGTTTAACCGCGTGCTGGGCGGCGGCATCGTAGCCGGTTCACTGGTATTGATAGGCGGCGAACCGGGTATCGGCAAATC
TACCCTGATGCTGCAGCTATCGCTCAATATGCCTGGCTTGCGGGTACTATATGTATCGGGCGAGGAAAGCGACCGGCAGA
TCAAGATGCGGGCAGAGCGATTAGCCCCCCAGCCCCCTGAAGGGGGAGCAGGAAGCCAAGCAACTCCCCCTTTAGGGGGT
GGGGGGGCTGGCGGCGATTGCTATATCCTCACCGAAACATCAACCCAAAACATTTTTAAACAAATAGAGCAATTACAGCC
CGAACTGGTGGTGATCGATTCGATACAGACGCTGCATTCGGCGCATATCGAATCTACTCCGGGCAGTGTATCGCAGGTGC
GCGAGTGCACGGCCGAGTTATTGCGCTTTGCCAAAGAGAGCGGTACGCCGGTATTTTTGATCGGTCATATTACCAAAGAC
GGCATGATAGCTGGTCCGAAGATACTGGAACACATGGTAGATACGGTGCTGCAATTTGAGGGCGACCGCCACCACGTATA
CCGCATACTCCGCGCGGTGAAGAACCGTTTCGGCTCAGCGTCGGAATTGGGTATTTACGAGATGCTGGGCGCAGGTTTGC
GCGAGGTGTCTAACCCGTCAGAGATCTTATTATCGCAACGGGAAGAGCAGTTAAGCGGCATCACCATCTCGGCTACTTTA
GAGGGCATGCGCCCCATGATGATAGAAACCCAGGCGCTGGTGAGTACATCCGCCTATGGGACGCCGCAACGCTCGGCTAC
GGGCTTTGATACCCGGCGGATGAATATGCTGCTGGCCGTGCTGGAAAAACGCTGCGGTTTTAAATTAGGCGCTAAGGACG
TCTTTTTGAACATTACCGGCGGCATCCGGGTAGAAGACCCGGCTATCGACCTGGGTCTTGCCGCTGCCATCATCTCATCG
CACGAGGATATCCCTATCCCCTTTAAAACCTGCTTCGCCGGTGAATTGGGCCTCTCGGGCGAGATCCGCGCCGTTAACCG
GGTAGAGCAACGCATTGCCGAAGCGCAAAAACTTGGCTTCGAGCAGATCTTCATCTCCAAGTACAATCTCCCAACCGGCG
GTAACGACAAAAAACGCATCGATCTGAGCCGCTATGAAATAGCGGTGAAAACGGTGGGTAGTATCGAGGAGGTGTTCACC
CTATTATTCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-242)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-449)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4TSG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.991

93.388

0.486
  radA Streptococcus pneumoniae Rx1

47.737

100

0.479
  radA Streptococcus pneumoniae D39

47.737

100

0.479
  radA Streptococcus pneumoniae R6

47.737

100

0.479
  radA Streptococcus pneumoniae TIGR4

47.737

100

0.479
  radA Streptococcus mitis NCTC 12261

47.737

100

0.479
  radA Streptococcus mitis SK321

47.531

100

0.477