Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   HRJ47_RS17820 Genome accession   NZ_CP054137
Coordinates   3664439..3664765 (-) Length   108 a.a.
NCBI ID   WP_068564720.1    Uniprot ID   A0A1C2PMY6
Organism   Acinetobacter pittii strain JXA13     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3659439..3669765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS17800 (HRJ47_17790) - 3659546..3660172 (-) 627 WP_017400183.1 FHA domain-containing protein -
  HRJ47_RS17805 (HRJ47_17795) gspD 3660213..3662483 (-) 2271 WP_057077393.1 type II secretion system secretin GspD -
  HRJ47_RS17810 (HRJ47_17800) - 3662525..3663361 (-) 837 WP_005079413.1 type II secretion system protein N -
  HRJ47_RS17815 (HRJ47_17805) gspN 3663361..3664104 (-) 744 WP_086398693.1 type II secretion system protein N -
  HRJ47_RS17820 (HRJ47_17810) hns 3664439..3664765 (-) 327 WP_068564720.1 H-NS family nucleoid-associated regulatory protein Regulator
  HRJ47_RS17825 (HRJ47_17815) - 3664960..3665400 (-) 441 WP_002121251.1 acyl-CoA thioesterase -
  HRJ47_RS17830 (HRJ47_17820) - 3665408..3666601 (-) 1194 WP_197738951.1 heme biosynthesis protein HemY -
  HRJ47_RS17835 (HRJ47_17825) - 3666611..3667453 (-) 843 WP_086611622.1 hypothetical protein -
  HRJ47_RS17840 (HRJ47_17830) hemD 3667462..3668229 (-) 768 WP_086611623.1 uroporphyrinogen-III synthase -
  HRJ47_RS17845 (HRJ47_17835) hemC 3668233..3669150 (-) 918 WP_032037675.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12492.15 Da        Isoelectric Point: 5.0524

>NTDB_id=451060 HRJ47_RS17820 WP_068564720.1 3664439..3664765(-) (hns) [Acinetobacter pittii strain JXA13]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNTE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=451060 HRJ47_RS17820 WP_068564720.1 3664439..3664765(-) (hns) [Acinetobacter pittii strain JXA13]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATACTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2PMY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991