Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HRJ47_RS14835 Genome accession   NZ_CP054137
Coordinates   3041515..3042552 (+) Length   345 a.a.
NCBI ID   WP_002121749.1    Uniprot ID   A0A009I411
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3036515..3047552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS14825 (HRJ47_14815) sbcC 3036899..3040495 (+) 3597 WP_086400211.1 SbcC/MukB-like Walker B domain-containing protein -
  HRJ47_RS14830 (HRJ47_14820) yggS 3040696..3041388 (-) 693 WP_044099923.1 YggS family pyridoxal phosphate-dependent enzyme -
  HRJ47_RS14835 (HRJ47_14825) pilT 3041515..3042552 (+) 1038 WP_002121749.1 type IV pilus twitching motility protein PilT Machinery gene
  HRJ47_RS14840 (HRJ47_14830) pilU 3042572..3043690 (+) 1119 WP_086400212.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  HRJ47_RS14845 (HRJ47_14835) fur 3043760..3044197 (-) 438 WP_002121758.1 ferric iron uptake transcriptional regulator -
  HRJ47_RS14850 (HRJ47_14840) omlA 3044309..3044707 (+) 399 WP_002121740.1 outer membrane protein assembly factor BamE -
  HRJ47_RS14855 (HRJ47_14845) - 3044772..3045086 (-) 315 WP_014205982.1 RnfH family protein -
  HRJ47_RS14860 (HRJ47_14850) - 3045086..3046153 (-) 1068 WP_140157923.1 hypothetical protein -
  HRJ47_RS14865 (HRJ47_14855) - 3046307..3046762 (-) 456 WP_086400214.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38389.97 Da        Isoelectric Point: 6.7269

>NTDB_id=451048 HRJ47_RS14835 WP_002121749.1 3041515..3042552(+) (pilT) [Acinetobacter pittii strain JXA13]
MDITELLAFSVKNGASDLHLSAGMPPMIRVDGEVRRINLPALDHKDVHRLVYDIMNDKQRRDYEEKLETDFSFEVPNVAR
FRVNAFNQNRGAGAVFRTIPSKVLTMEDLGLGQIFKDICDYPRGIVLVTGPTGSGKSTTLAAMMDYINENRYDHILTVED
PIEFVHQSKKCLINQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANHGMTTLDQSL
KNLVSRGVISPQTARTAAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=451048 HRJ47_RS14835 WP_002121749.1 3041515..3042552(+) (pilT) [Acinetobacter pittii strain JXA13]
ATGGATATTACAGAGCTACTCGCCTTCTCTGTGAAAAATGGCGCGTCCGATTTACACCTATCTGCTGGCATGCCGCCAAT
GATTCGCGTGGATGGTGAAGTCCGTCGCATTAACTTACCTGCCCTAGATCATAAAGATGTTCATCGTCTGGTCTACGACA
TCATGAATGATAAACAGCGTCGTGACTACGAAGAAAAACTCGAAACCGACTTTTCTTTTGAAGTACCTAATGTTGCGCGT
TTCCGTGTTAACGCATTTAATCAAAACCGTGGTGCAGGTGCAGTGTTTCGTACGATTCCGTCCAAAGTACTCACCATGGA
AGATTTAGGCTTAGGACAAATCTTTAAAGACATTTGTGACTATCCTCGCGGCATTGTACTGGTGACAGGTCCAACAGGTT
CTGGTAAATCGACCACACTTGCAGCGATGATGGACTATATTAATGAAAACCGTTATGACCATATTTTAACGGTTGAAGAC
CCTATCGAATTTGTACACCAATCTAAGAAATGTCTCATCAACCAACGTGAAGTGCATCGTGATACACACGGCTTTAATGA
GGCGCTACGTTCAGCACTGCGTGAAGACCCAGATATTATTTTGGTCGGTGAGATGCGTGACCTTGAAACTATTCGTTTAG
CGCTTACCGCTGCTGAAACAGGTCATTTGGTGTTTGGCACGCTGCATACCACTTCTGCTGCGAAAACCATTGACCGTGTG
ATTGACGTATTCCCTGCCGAAGAAAAAGATATGGTTCGTGCCATGCTCTCTGAATCATTACAGGCTGTAATTTCACAAAC
CCTGCTTAAAAAGAATGGCGGCGGACGTGTGGCAGCTCATGAAATCATGATTGGTATTCCTGCCATTCGTAACTTAATTC
GAGAAAATAAAGTCGCGCAAATGTACTCAGCTATTCAGACTGGCGCAAATCATGGCATGACCACCCTCGACCAAAGCTTA
AAAAATCTGGTGTCTCGCGGTGTGATCAGCCCACAAACGGCTCGTACTGCTGCTAAACAGCCAGAATCATTTCTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009I411

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

99.13

100

0.991
  pilT Acinetobacter baumannii D1279779

98.841

100

0.988
  pilT Acinetobacter baumannii strain A118

98.841

100

0.988
  pilT Acinetobacter baylyi ADP1

88.663

99.71

0.884
  pilT Pseudomonas stutzeri DSM 10701

83.43

99.71

0.832
  pilT Pseudomonas aeruginosa PAK

83.14

99.71

0.829
  pilT Legionella pneumophila strain Lp02

75.291

99.71

0.751
  pilT Legionella pneumophila strain ERS1305867

75.291

99.71

0.751
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

71.429

97.391

0.696
  pilT Vibrio cholerae strain A1552

71.429

97.391

0.696
  pilT Neisseria meningitidis 8013

68.116

100

0.681
  pilT Neisseria gonorrhoeae MS11

67.826

100

0.678
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.884

100

0.519
  pilU Vibrio cholerae strain A1552

41.593

98.261

0.409
  pilU Pseudomonas stutzeri DSM 10701

40.896

97.101

0.397
  pilU Acinetobacter baylyi ADP1

39.017

100

0.391