Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HRJ47_RS10660 Genome accession   NZ_CP054137
Coordinates   2184968..2185348 (-) Length   126 a.a.
NCBI ID   WP_017482272.1    Uniprot ID   A0A9X3QIG5
Organism   Acinetobacter pittii strain JXA13     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2179968..2190348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS10630 (HRJ47_10630) tadA 2179971..2180474 (-) 504 WP_002121378.1 tRNA adenosine(34) deaminase TadA -
  HRJ47_RS10635 (HRJ47_10635) hibch 2180480..2181604 (-) 1125 WP_014206599.1 enoyl-CoA hydratase/isomerase family protein -
  HRJ47_RS10640 (HRJ47_10640) ung 2181601..2182314 (-) 714 WP_017399503.1 uracil-DNA glycosylase -
  HRJ47_RS10645 (HRJ47_10645) - 2182368..2182964 (-) 597 WP_017399502.1 6-pyruvoyl trahydropterin synthase family protein -
  HRJ47_RS10650 (HRJ47_10650) gspK 2183193..2184152 (-) 960 WP_086398948.1 type II secretion system minor pseudopilin GspK -
  HRJ47_RS10655 (HRJ47_10655) xcpW 2184153..2184968 (-) 816 WP_069035668.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HRJ47_RS10660 (HRJ47_10660) xcpV 2184968..2185348 (-) 381 WP_017482272.1 type II secretion system minor pseudopilin GspI Machinery gene
  HRJ47_RS10665 (HRJ47_10665) - 2185338..2185892 (-) 555 WP_086398947.1 type II secretion system protein -
  HRJ47_RS10670 (HRJ47_10670) - 2185899..2186507 (-) 609 WP_057085321.1 TetR/AcrR family transcriptional regulator -
  HRJ47_RS10675 (HRJ47_10675) ycfH 2186544..2187317 (-) 774 WP_086398946.1 TatD family hydrolase -
  HRJ47_RS10680 (HRJ47_10680) pilZ 2187335..2187676 (-) 342 WP_064784079.1 PilZ domain-containing protein -
  HRJ47_RS10685 (HRJ47_10685) holB 2187687..2188667 (-) 981 WP_068566161.1 DNA polymerase III subunit delta' -
  HRJ47_RS10690 (HRJ47_10690) kdsB 2188681..2189442 (-) 762 WP_086398945.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13976.17 Da        Isoelectric Point: 9.4463

>NTDB_id=451044 HRJ47_RS10660 WP_017482272.1 2184968..2185348(-) (xcpV) [Acinetobacter pittii strain JXA13]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVALMEINQEWLEGTQSKQITSQGETWQI
DKSAQSTISPNVQKVDLQISLYDSDKGKVQNGITHLVFFNYPMKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=451044 HRJ47_RS10660 WP_017482272.1 2184968..2185348(-) (xcpV) [Acinetobacter pittii strain JXA13]
ATGAAATCTAAAGGTTTTACTCTATTAGAAGTAATGGTTGCTTTAGCAATTTTTGCAGTAGCGGCTGTCGCGTTAACTAA
AGTAGCCATGCAATATACTCAATCTACCTCAAATGCAATTCTTAGAACAAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTTTAATGGAGATAAATCAGGAATGGCTTGAAGGTACTCAAAGTAAGCAAATTACTTCTCAAGGCGAAACTTGGCAGATT
GACAAATCTGCACAATCTACAATTAGCCCGAATGTTCAGAAAGTAGATTTACAAATTAGCTTATATGATTCAGATAAGGG
CAAAGTTCAAAATGGTATTACTCACTTGGTATTTTTTAATTATCCAATGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

93.651

100

0.937