Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   HRJ47_RS02375 Genome accession   NZ_CP054137
Coordinates   481993..482877 (+) Length   294 a.a.
NCBI ID   WP_086399111.1    Uniprot ID   -
Organism   Acinetobacter pittii strain JXA13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 476993..487877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ47_RS02350 (HRJ47_02350) - 477307..478554 (-) 1248 WP_086399107.1 YihY family inner membrane protein -
  HRJ47_RS02355 (HRJ47_02355) wrbA 478916..479518 (+) 603 WP_197738964.1 NAD(P)H:quinone oxidoreductase -
  HRJ47_RS02360 (HRJ47_02360) xpt 479570..480145 (-) 576 WP_002119547.1 xanthine phosphoribosyltransferase -
  HRJ47_RS02365 (HRJ47_02365) - 480218..480931 (-) 714 WP_086399109.1 DUF3108 domain-containing protein -
  HRJ47_RS02370 (HRJ47_02370) - 481089..481760 (-) 672 WP_086399110.1 hypothetical protein -
  HRJ47_RS02375 (HRJ47_02375) tonB2 481993..482877 (+) 885 WP_086399111.1 energy transducer TonB Machinery gene
  HRJ47_RS02380 (HRJ47_02380) ybeY 482930..483406 (-) 477 WP_086399112.1 rRNA maturation RNase YbeY -
  HRJ47_RS02385 (HRJ47_02385) phoL 483416..484504 (-) 1089 WP_002119513.1 PhoH family protein -
  HRJ47_RS02390 (HRJ47_02390) miaB 484542..485993 (-) 1452 WP_002119558.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33507.12 Da        Isoelectric Point: 8.3881

>NTDB_id=451037 HRJ47_RS02375 WP_086399111.1 481993..482877(+) (tonB2) [Acinetobacter pittii strain JXA13]
MLNKRSLSIESFHYWWKDQVFIAATILAILLHILVLLINFAMPSPSEQSTKEIAISIRPTNEPVVQADFLAQADQQGSGA
FREAHRTSSDTPNPMLNDASTGNAELETLQKIQQQRELKFEEKVLMTVLSWQKQADASQRKKELEQLQSQFQAKAAMVAS
LEAQYLQRRQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHSILDEAAKSSVRRGAPFGHFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=451037 HRJ47_RS02375 WP_086399111.1 481993..482877(+) (tonB2) [Acinetobacter pittii strain JXA13]
ATGTTGAACAAAAGAAGTCTATCTATAGAGTCTTTTCATTATTGGTGGAAAGACCAAGTCTTTATTGCTGCAACAATATT
AGCAATCTTACTGCATATTCTTGTATTGCTCATTAACTTTGCTATGCCTAGCCCATCAGAGCAGTCTACTAAAGAAATTG
CAATTTCAATTCGACCAACCAATGAGCCAGTTGTTCAGGCAGATTTTTTGGCACAAGCAGACCAGCAGGGTTCAGGTGCA
TTTCGTGAGGCTCACCGGACTTCTAGTGATACTCCAAATCCGATGCTTAATGATGCTTCAACGGGGAATGCAGAGTTAGA
AACTTTGCAAAAGATTCAGCAACAACGAGAGCTTAAATTTGAAGAAAAAGTTCTAATGACGGTTTTAAGTTGGCAGAAAC
AAGCTGATGCAAGTCAAAGAAAAAAAGAATTAGAACAACTACAAAGTCAATTTCAAGCAAAAGCTGCGATGGTTGCAAGC
CTTGAAGCACAATATTTGCAACGTAGACAAGATTTTAGTCGCCAGCAAAAAATAAAAACAGTAGATGGAATTCAAGCGAA
GAAAGATGCCTCGGCTGCTTATTTAGATAAGTTTCGTGAAAAAGTAGAGCTTTACGGTAATCGCTATTATCCCGAAGAAG
CGAAACAACAGCAGCTCAAAGGTGAAGTTCGTTTAATGGTGATTTTGAACGCTCAAGGCGGAATTCGTGCAATCCGTTTG
CTTGAAAGCTCAGGGCATTCAATACTTGATGAGGCTGCAAAGTCTTCAGTACGTCGCGGTGCGCCATTTGGGCATTTTGA
TGCAAATATGAAAGATATTTCGGAGTTGCGTATTGTTCGTACTTGGCGTTTTGATCCAGCGGAAGCTGAATTTGAGGTTC
ACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

88.435

100

0.884