Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6G22_RS05940 Genome accession   NZ_CP065737
Coordinates   1118028..1118783 (-) Length   251 a.a.
NCBI ID   WP_025017045.1    Uniprot ID   -
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1113028..1123783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS05920 (I6G22_05925) - 1113497..1114477 (+) 981 WP_010905076.1 alpha-ketoacid dehydrogenase subunit beta -
  I6G22_RS05925 (I6G22_05930) - 1114470..1116059 (+) 1590 WP_023189470.1 2-oxo acid dehydrogenase subunit E2 -
  I6G22_RS05930 (I6G22_05935) lpdA 1116252..1117670 (+) 1419 WP_023189469.1 dihydrolipoyl dehydrogenase -
  I6G22_RS05935 (I6G22_05940) - 1117741..1117914 (-) 174 WP_021214949.1 helix-turn-helix domain-containing protein -
  I6G22_RS05940 (I6G22_05945) recO 1118028..1118783 (-) 756 WP_025017045.1 DNA repair protein RecO Machinery gene
  I6G22_RS05945 (I6G22_05950) - 1118882..1120057 (-) 1176 WP_012896922.1 pyridoxal phosphate-dependent aminotransferase -
  I6G22_RS05955 (I6G22_05960) - 1120522..1121043 (-) 522 WP_021723185.1 GNAT family N-acetyltransferase -
  I6G22_RS05960 (I6G22_05965) - 1121253..1122881 (+) 1629 WP_017863946.1 SulP family inorganic anion transporter -
  I6G22_RS05965 (I6G22_05970) - 1122955..1123197 (-) 243 WP_023189466.1 TM2 domain-containing protein -
  I6G22_RS05970 (I6G22_05975) - 1123274..1123723 (-) 450 WP_023189465.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28717.92 Da        Isoelectric Point: 5.9551

>NTDB_id=451017 I6G22_RS05940 WP_025017045.1 1118028..1118783(-) (recO) [Lactococcus lactis strain FDAARGOS_865]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKTVG
PFDFSYKFSGCLCPQHFEEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=451017 I6G22_RS05940 WP_025017045.1 1118028..1118783(-) (recO) [Lactococcus lactis strain FDAARGOS_865]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAAATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCGCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTGGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAACCGTTGGA
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGAAGAAGATTTACGACGGAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTATATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-72)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534