Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HRJ37_RS15590 Genome accession   NZ_CP054136
Coordinates   2975024..2975665 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain 11-1-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2970024..2980665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRJ37_RS15555 (HRJ37_15555) - 2971152..2971583 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  HRJ37_RS15560 (HRJ37_15560) - 2971583..2971924 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  HRJ37_RS15565 (HRJ37_15565) - 2971917..2973395 (+) 1479 WP_058336867.1 Na+/H+ antiporter subunit D -
  HRJ37_RS15570 (HRJ37_15570) - 2973402..2973881 (+) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  HRJ37_RS15575 (HRJ37_15575) - 2973881..2974162 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  HRJ37_RS15580 (HRJ37_15580) mnhG 2974146..2974520 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  HRJ37_RS15585 (HRJ37_15585) - 2974611..2975000 (-) 390 WP_008345855.1 hotdog fold thioesterase -
  HRJ37_RS15590 (HRJ37_15590) comA 2975024..2975665 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  HRJ37_RS15595 (HRJ37_15595) comP 2975746..2978058 (-) 2313 WP_041507704.1 ATP-binding protein Regulator
  HRJ37_RS15600 (HRJ37_15600) comX 2978112..2978282 (-) 171 WP_074041927.1 competence pheromone ComX -
  HRJ37_RS15605 (HRJ37_15605) - 2978279..2979193 (-) 915 WP_041507705.1 polyprenyl synthetase family protein -
  HRJ37_RS15610 (HRJ37_15610) degQ 2979345..2979485 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  HRJ37_RS15615 (HRJ37_15615) - 2979991..2980344 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=451008 HRJ37_RS15590 WP_007500477.1 2975024..2975665(-) (comA) [Bacillus altitudinis strain 11-1-1]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=451008 HRJ37_RS15590 WP_007500477.1 2975024..2975665(-) (comA) [Bacillus altitudinis strain 11-1-1]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TGATTTCACAGCAACAAGAGAAGCCAGAACAGGCACAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACGGAAGCGGTGTTAATTGCAAAATCGGAGAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718