Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   I6G22_RS04070 Genome accession   NZ_CP065737
Coordinates   743673..744389 (+) Length   238 a.a.
NCBI ID   WP_003131538.1    Uniprot ID   Q9CID8
Organism   Lactococcus lactis strain FDAARGOS_865     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 738673..749389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6G22_RS04055 (I6G22_04060) - 738998..741307 (-) 2310 WP_003131533.1 glycoside hydrolase family 65 protein -
  I6G22_RS04060 (I6G22_04065) - 741375..742940 (-) 1566 WP_025016545.1 PTS transporter subunit EIIC -
  I6G22_RS04065 (I6G22_04070) - 743077..743562 (-) 486 WP_012897247.1 PTS glucose transporter subunit IIA -
  I6G22_RS04070 (I6G22_04075) treR 743673..744389 (+) 717 WP_003131538.1 trehalose operon repressor Regulator
  I6G22_RS04075 (I6G22_04080) glmM 744465..745823 (-) 1359 WP_003131539.1 phosphoglucosamine mutase -
  I6G22_RS04080 (I6G22_04085) - 745869..746828 (-) 960 WP_025016546.1 YbbR-like domain-containing protein -
  I6G22_RS04085 (I6G22_04090) cdaA 746818..747696 (-) 879 WP_044009723.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27865.52 Da        Isoelectric Point: 6.4168

>NTDB_id=451000 I6G22_RS04070 WP_003131538.1 743673..744389(+) (treR) [Lactococcus lactis strain FDAARGOS_865]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=451000 I6G22_RS04070 WP_003131538.1 743673..744389(+) (treR) [Lactococcus lactis strain FDAARGOS_865]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CID8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462